Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
Cx3cl1O35188 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cx3cl1O35188 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Cx3cl1O35188 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
Cx3cl1O35188 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cx3cl1O35188 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cx3cl1O35188 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cx3cl1O35188 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cx3cl1O35188 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Cx3cl1O35188 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.07■■□□□ 1.12
Cx3cl1O35188 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cx3cl1O35188 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Cx3cl1O35188 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cx3cl1O35188 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Cx3cl1O35188 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cx3cl1O35188 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cx3cl1O35188 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cx3cl1O35188 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cx3cl1O35188 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC22.04■■□□□ 1.12
Cx3cl1O35188 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
Cx3cl1O35188 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
Cx3cl1O35188 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Cx3cl1O35188 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cx3cl1O35188 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.02■■□□□ 1.12
Cx3cl1O35188 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cx3cl1O35188 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22■■□□□ 1.11
Cx3cl1O35188 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
Cx3cl1O35188 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Cx3cl1O35188 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
Cx3cl1O35188 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Cx3cl1O35188 Gm7432-201ENSMUST00000210343 879 ntBASIC21.97■■□□□ 1.11
Cx3cl1O35188 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.97■■□□□ 1.11
Cx3cl1O35188 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Cx3cl1O35188 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.96■■□□□ 1.11
Cx3cl1O35188 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cx3cl1O35188 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Cx3cl1O35188 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.95■■□□□ 1.1
Cx3cl1O35188 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Cx3cl1O35188 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.93■■□□□ 1.1
Cx3cl1O35188 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Cx3cl1O35188 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cx3cl1O35188 Particl-201ENSMUST00000205370 1560 ntBASIC21.92■■□□□ 1.1
Cx3cl1O35188 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cx3cl1O35188 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cx3cl1O35188 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.92■■□□□ 1.1
Cx3cl1O35188 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cx3cl1O35188 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cx3cl1O35188 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cx3cl1O35188 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.91■■□□□ 1.1
Cx3cl1O35188 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.91■■□□□ 1.1
Cx3cl1O35188 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cx3cl1O35188 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cx3cl1O35188 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cx3cl1O35188 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cx3cl1O35188 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
Cx3cl1O35188 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cx3cl1O35188 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.88■■□□□ 1.09
Cx3cl1O35188 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cx3cl1O35188 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cx3cl1O35188 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.87■■□□□ 1.09
Cx3cl1O35188 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Cx3cl1O35188 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.86■■□□□ 1.09
Cx3cl1O35188 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.86■■□□□ 1.09
Cx3cl1O35188 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC21.86■■□□□ 1.09
Cx3cl1O35188 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Cx3cl1O35188 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cx3cl1O35188 Gm11599-201ENSMUST00000118720 878 ntBASIC21.84■■□□□ 1.09
Cx3cl1O35188 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Cx3cl1O35188 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cx3cl1O35188 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Cx3cl1O35188 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Cx3cl1O35188 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cx3cl1O35188 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cx3cl1O35188 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cx3cl1O35188 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Cx3cl1O35188 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Cx3cl1O35188 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Cx3cl1O35188 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cx3cl1O35188 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Cx3cl1O35188 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cx3cl1O35188 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Cx3cl1O35188 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cx3cl1O35188 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Cx3cl1O35188 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
Cx3cl1O35188 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Cx3cl1O35188 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cx3cl1O35188 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cx3cl1O35188 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.75■■□□□ 1.07
Cx3cl1O35188 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Cx3cl1O35188 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Cx3cl1O35188 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cx3cl1O35188 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cx3cl1O35188 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cx3cl1O35188 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.73■■□□□ 1.07
Cx3cl1O35188 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.73■■□□□ 1.07
Cx3cl1O35188 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cx3cl1O35188 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.73■■□□□ 1.07
Cx3cl1O35188 Gm37136-201ENSMUST00000194368 194 ntBASIC21.73■■□□□ 1.07
Cx3cl1O35188 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Cx3cl1O35188 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.72■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms