Protein–RNA interactions for Protein: D3YZU1

Shank1, SH3 and multiple ankyrin repeat domains protein 1, mousemouse

Predictions only

Length 2,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shank1D3YZU1 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.42■■□□□ 1.02
Shank1D3YZU1 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.41■■□□□ 1.02
Shank1D3YZU1 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.4■■□□□ 1.02
Shank1D3YZU1 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
Shank1D3YZU1 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Shank1D3YZU1 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shank1D3YZU1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Shank1D3YZU1 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Shank1D3YZU1 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Shank1D3YZU1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Shank1D3YZU1 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shank1D3YZU1 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shank1D3YZU1 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.36■■□□□ 1.01
Shank1D3YZU1 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Shank1D3YZU1 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shank1D3YZU1 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shank1D3YZU1 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shank1D3YZU1 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Shank1D3YZU1 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Shank1D3YZU1 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shank1D3YZU1 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Shank1D3YZU1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shank1D3YZU1 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Shank1D3YZU1 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.32■■□□□ 1
Shank1D3YZU1 Mir3960-201ENSMUST00000198213 73 ntBASIC21.31■■□□□ 1
Shank1D3YZU1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.31■■□□□ 1
Shank1D3YZU1 Gm5812-201ENSMUST00000061073 957 ntBASIC21.3■■□□□ 1
Shank1D3YZU1 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
Shank1D3YZU1 Gm15039-201ENSMUST00000118914 875 ntBASIC21.28■■□□□ 1
Shank1D3YZU1 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.27■■□□□ 1
Shank1D3YZU1 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.27■■□□□ 1
Shank1D3YZU1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.27■■□□□ 1
Shank1D3YZU1 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shank1D3YZU1 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Shank1D3YZU1 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shank1D3YZU1 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Shank1D3YZU1 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Shank1D3YZU1 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shank1D3YZU1 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shank1D3YZU1 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Shank1D3YZU1 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.26■□□□□ 0.99
Shank1D3YZU1 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shank1D3YZU1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shank1D3YZU1 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shank1D3YZU1 Gm22567-201ENSMUST00000175542 342 ntBASIC21.24■□□□□ 0.99
Shank1D3YZU1 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.24■□□□□ 0.99
Shank1D3YZU1 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shank1D3YZU1 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.23■□□□□ 0.99
Shank1D3YZU1 Gm14523-201ENSMUST00000117260 558 ntBASIC21.23■□□□□ 0.99
Shank1D3YZU1 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shank1D3YZU1 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shank1D3YZU1 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Shank1D3YZU1 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.23■□□□□ 0.99
Shank1D3YZU1 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.23■□□□□ 0.99
Shank1D3YZU1 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Shank1D3YZU1 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Shank1D3YZU1 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shank1D3YZU1 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shank1D3YZU1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Shank1D3YZU1 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.21■□□□□ 0.99
Shank1D3YZU1 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shank1D3YZU1 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shank1D3YZU1 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Shank1D3YZU1 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shank1D3YZU1 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shank1D3YZU1 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Shank1D3YZU1 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.19■□□□□ 0.98
Shank1D3YZU1 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shank1D3YZU1 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shank1D3YZU1 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Shank1D3YZU1 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shank1D3YZU1 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shank1D3YZU1 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shank1D3YZU1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shank1D3YZU1 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
Shank1D3YZU1 Gm37136-201ENSMUST00000194368 194 ntBASIC21.16■□□□□ 0.98
Shank1D3YZU1 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shank1D3YZU1 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.15■□□□□ 0.98
Shank1D3YZU1 Gm10420-201ENSMUST00000121713 882 ntBASIC21.15■□□□□ 0.98
Shank1D3YZU1 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.15■□□□□ 0.98
Shank1D3YZU1 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Shank1D3YZU1 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.14■□□□□ 0.98
Shank1D3YZU1 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Shank1D3YZU1 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
Shank1D3YZU1 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Shank1D3YZU1 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Shank1D3YZU1 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shank1D3YZU1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Shank1D3YZU1 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shank1D3YZU1 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shank1D3YZU1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shank1D3YZU1 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.13■□□□□ 0.97
Shank1D3YZU1 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.12■□□□□ 0.97
Shank1D3YZU1 Gm5067-201ENSMUST00000170449 1009 ntBASIC21.12■□□□□ 0.97
Shank1D3YZU1 Gm5921-201ENSMUST00000075898 882 ntBASIC21.12■□□□□ 0.97
Shank1D3YZU1 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Shank1D3YZU1 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Shank1D3YZU1 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.1■□□□□ 0.97
Shank1D3YZU1 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Shank1D3YZU1 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 156.2 ms