Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS35Q96QK1 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 RNU6-891P-201ENST00000384280 111 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 AL136116.2-201ENST00000404020 785 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AP002530.1-201ENST00000405705 684 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 SETP10-201ENST00000424368 814 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 HMGB3P10-201ENST00000434734 572 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 AL450023.3-201ENST00000440592 271 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 TXNP5-201ENST00000441043 315 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC021660.1-201ENST00000465006 554 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS35Q96QK1 RN7SL97P-201ENST00000486780 299 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 RNU6-319P-201ENST00000516025 108 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC012339.2-201ENST00000523996 453 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AP000676.2-201ENST00000529711 301 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 MTND2P13-201ENST00000577438 1039 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 MEMO1P5-201ENST00000604810 406 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AL590410.1-201ENST00000617925 333 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC091905.4-201ENST00000623432 202 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 CASC19-222ENST00000641321 1173 ntBASIC4.97□□□□□ -1.61
VPS35Q96QK1 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS35Q96QK1 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS35Q96QK1 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS35Q96QK1 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
VPS35Q96QK1 CASC19-204ENST00000641001 2055 ntBASIC4.96□□□□□ -1.61
VPS35Q96QK1 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS35Q96QK1 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.96□□□□□ -1.61
VPS35Q96QK1 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AL034370.1-201ENST00000397254 1590 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 RNU6-386P-201ENST00000362650 107 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 MT-RNR1-201ENST00000389680 954 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AL589647.1-201ENST00000402485 466 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 RN7SKP16-201ENST00000410180 299 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 BRWD1P3-201ENST00000428816 390 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 RBMY2QP-201ENST00000429799 1147 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 HMGB1P4-201ENST00000455362 567 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 NIFKP7-201ENST00000503365 834 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC051619.2-201ENST00000559063 397 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC116553.2-201ENST00000564203 463 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC005377.1-201ENST00000605126 456 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC073575.2-201ENST00000614212 627 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 AL391597.1-201ENST00000618707 694 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 AC120338.1-201ENST00000625074 1541 ntBASIC4.96□□□□□ -1.62
VPS35Q96QK1 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS35Q96QK1 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
VPS35Q96QK1 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 INTS6P1-201ENST00000504674 2530 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 RN7SKP95-201ENST00000362860 303 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 RNA5SP105-201ENST00000391123 113 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms