Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORA62-201ENST00000365493 153 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC240504.1-201ENST00000395709 845 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 RNU2-50P-201ENST00000410494 143 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AL590806.1-201ENST00000415818 853 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 DDX39BP1-205ENST00000422507 192 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC017019.1-201ENST00000426129 261 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 DNAJC19P7-201ENST00000428811 344 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 TXNP2-201ENST00000443918 295 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 RN7SL189P-201ENST00000468631 289 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AP000797.2-201ENST00000475768 606 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 RPL7P41-201ENST00000485823 957 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 RPL37AP8-201ENST00000494116 276 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 SNORA70.11-201ENST00000515987 138 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 SNORA70.13-201ENST00000516116 138 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC019322.1-201ENST00000571869 389 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 MTCO2P22-201ENST00000603246 681 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 MIR6133-201ENST00000617057 108 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC009704.2-201ENST00000618739 483 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC145207.9-201ENST00000623802 325 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AC073869.10-201ENST00000642016 354 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL607077.1-201ENST00000401718 499 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 RN7SKP114-201ENST00000410327 279 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 OR5M12P-201ENST00000423388 929 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 HSPD1P12-201ENST00000429127 1069 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 MTND2P40-201ENST00000436718 841 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL606490.8-201ENST00000441624 319 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 MED28P3-201ENST00000444288 531 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 NDUFA5P8-201ENST00000449019 346 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC092905.1-201ENST00000467527 949 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 RPL5P22-201ENST00000480199 884 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 RN7SL459P-201ENST00000481078 302 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC068587.1-201ENST00000483613 781 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 MTND3P6-201ENST00000485242 339 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 NPM1P28-201ENST00000492269 840 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 RN7SL591P-201ENST00000496150 292 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 HPRT1P1-201ENST00000509498 657 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 NPM1P35-201ENST00000533043 868 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AL031320.1-201ENST00000604177 357 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC087385.3-201ENST00000620477 187 ntBASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HDDC3Q8N4P3 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 CASC19-284ENST00000642142 1868 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms