Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC090142.1-201ENST00000465776 462 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 RN7SL808P-201ENST00000496066 299 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA1P55317 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA1P55317 AC021146.3-201ENST00000511911 260 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.5□□□□□ -1.69
FOXA1P55317 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA1P55317 OR5AZ1P-201ENST00000527448 943 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA1P55317 AC021006.3-201ENST00000530771 192 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA1P55317 RPL21P7-201ENST00000557463 483 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA1P55317 AC026979.4-201ENST00000606555 645 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AL445222.1-201ENST00000607259 628 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AC091979.2-201ENST00000607514 214 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA1P55317 PROS2P-201ENST00000474651 1951 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
FOXA1P55317 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
FOXA1P55317 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA1P55317 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA1P55317 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA1P55317 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA1P55317 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA1P55317 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 INTS6P1-201ENST00000504674 2530 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.49□□□□□ -1.69
FOXA1P55317 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
FOXA1P55317 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA1P55317 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 SEPT7P8-201ENST00000413308 775 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 RPL21P91-201ENST00000429231 479 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.49□□□□□ -1.69
FOXA1P55317 AC025164.1-201ENST00000496249 478 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA1P55317 OR10G5P-201ENST00000532733 358 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 CYCSP28-201ENST00000534284 321 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 AP001880.2-201ENST00000538233 448 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 GSTP1P1-201ENST00000548078 319 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.49□□□□□ -1.69
FOXA1P55317 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 AC119501.1-201ENST00000603646 475 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 OR7A19P-201ENST00000608051 733 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 AC016542.2-201ENST00000624201 619 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 AL391684.1-202ENST00000641293 1636 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 ZFRP1-201ENST00000457579 2970 ntBASIC4.49□□□□□ -1.69
FOXA1P55317 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
FOXA1P55317 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
FOXA1P55317 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 AC109780.1-201ENST00000451768 1344 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 AC135352.1-201ENST00000506173 1418 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.48□□□□□ -1.69
FOXA1P55317 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.48□□□□□ -1.69
FOXA1P55317 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 IL6STP1-201ENST00000346911 1020 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
FOXA1P55317 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 DPPA2P3-201ENST00000411853 655 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC016769.2-201ENST00000414815 475 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC004448.2-201ENST00000422360 586 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.48□□□□□ -1.69
FOXA1P55317 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.48□□□□□ -1.69
FOXA1P55317 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.48□□□□□ -1.69
FOXA1P55317 PSMD10P3-201ENST00000437000 448 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.48□□□□□ -1.69
FOXA1P55317 AL356390.1-201ENST00000455684 397 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC005008.1-201ENST00000456151 612 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.48□□□□□ -1.69
FOXA1P55317 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 RN7SL629P-201ENST00000489622 285 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.48□□□□□ -1.69
FOXA1P55317 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.48□□□□□ -1.69
FOXA1P55317 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.48□□□□□ -1.69
FOXA1P55317 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.48□□□□□ -1.69
FOXA1P55317 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.48□□□□□ -1.69
FOXA1P55317 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.48□□□□□ -1.69
FOXA1P55317 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.48□□□□□ -1.69
FOXA1P55317 AP005262.1-201ENST00000582646 997 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 MIR4443-201ENST00000585052 53 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC006272.2-201ENST00000594725 163 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.48□□□□□ -1.69
FOXA1P55317 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC4.48□□□□□ -1.69
FOXA1P55317 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 AC087385.3-201ENST00000620477 187 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 CR788268.1-201ENST00000603931 1809 ntBASIC4.48□□□□□ -1.69
FOXA1P55317 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms