Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 AC007012.2-201ENST00000623206 1676 ntBASIC6.7□□□□□ -1.34
LIG3P49916 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
LIG3P49916 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 AC007996.1-201ENST00000620414 2821 ntBASIC6.69□□□□□ -1.34
LIG3P49916 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
LIG3P49916 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
LIG3P49916 HSPD1P9-201ENST00000420325 1636 ntBASIC6.69□□□□□ -1.34
LIG3P49916 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
LIG3P49916 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.69□□□□□ -1.34
LIG3P49916 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.69□□□□□ -1.34
LIG3P49916 MIR191-201ENST00000384873 92 ntBASIC6.69□□□□□ -1.34
LIG3P49916 TMSB4XP8-201ENST00000402089 135 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AL133264.1-201ENST00000407157 562 ntBASIC6.69□□□□□ -1.34
LIG3P49916 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 TMSB4XP6-201ENST00000415187 135 ntBASIC6.69□□□□□ -1.34
LIG3P49916 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.69□□□□□ -1.34
LIG3P49916 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.69□□□□□ -1.34
LIG3P49916 TMSB4XP1-201ENST00000424567 135 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
LIG3P49916 AC092601.1-201ENST00000444526 383 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.69□□□□□ -1.34
LIG3P49916 COX6CP18-201ENST00000448769 222 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.69□□□□□ -1.34
LIG3P49916 AC104306.1-201ENST00000449702 371 ntBASIC6.69□□□□□ -1.34
LIG3P49916 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 SSXP1-201ENST00000453640 473 ntBASIC6.69□□□□□ -1.34
LIG3P49916 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 AC092824.1-201ENST00000483524 576 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AC122718.2-201ENST00000505325 591 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.69□□□□□ -1.34
LIG3P49916 MTND2P33-201ENST00000506452 1031 ntBASIC6.69□□□□□ -1.34
LIG3P49916 OR52H2P-201ENST00000514607 902 ntBASIC6.69□□□□□ -1.34
LIG3P49916 FABP5P5-201ENST00000515537 406 ntBASIC6.69□□□□□ -1.34
LIG3P49916 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 IGLV3-6-201ENST00000523937 250 ntBASIC6.69□□□□□ -1.34
LIG3P49916 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC6.69□□□□□ -1.34
LIG3P49916 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC6.69□□□□□ -1.34
LIG3P49916 OR6C7P-201ENST00000547875 934 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC6.69□□□□□ -1.34
LIG3P49916 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC6.69□□□□□ -1.34
LIG3P49916 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.69□□□□□ -1.34
LIG3P49916 MIR212-201ENST00000586026 110 ntBASIC6.69□□□□□ -1.34
LIG3P49916 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.69□□□□□ -1.34
LIG3P49916 AC009237.13-201ENST00000603193 276 ntBASIC6.69□□□□□ -1.34
LIG3P49916 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 AC010333.3-201ENST00000615100 402 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AC145207.9-201ENST00000623802 325 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AC068213.1-201ENST00000625124 226 ntBASIC6.69□□□□□ -1.34
LIG3P49916 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC6.69□□□□□ -1.34
LIG3P49916 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.69□□□□□ -1.34
LIG3P49916 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.69□□□□□ -1.34
LIG3P49916 AC099654.12-201ENST00000639868 649 ntBASIC6.69□□□□□ -1.34
LIG3P49916 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
LIG3P49916 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIG3P49916 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
LIG3P49916 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
LIG3P49916 SNORA38B-201ENST00000363524 131 ntBASIC6.68□□□□□ -1.34
LIG3P49916 RNU6-1283P-201ENST00000365314 105 ntBASIC6.68□□□□□ -1.34
LIG3P49916 ZNF603P-201ENST00000405613 487 ntBASIC6.68□□□□□ -1.34
LIG3P49916 OR8G2P-201ENST00000412796 908 ntBASIC6.68□□□□□ -1.34
LIG3P49916 OR51A3P-201ENST00000413596 924 ntBASIC6.68□□□□□ -1.34
LIG3P49916 RPS7P13-201ENST00000413955 498 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC6.68□□□□□ -1.34
LIG3P49916 RPS27AP7-201ENST00000422792 455 ntBASIC6.68□□□□□ -1.34
LIG3P49916 MGAT2P2-201ENST00000427194 797 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC010975.2-201ENST00000427781 588 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC6.68□□□□□ -1.34
LIG3P49916 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 GAPDHP19-201ENST00000431768 1005 ntBASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms