Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC7.75□□□□□ -1.17
CUX1P39880 CASC19-255ENST00000641733 1385 ntBASIC7.75□□□□□ -1.17
CUX1P39880 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CUX1P39880 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CUX1P39880 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CUX1P39880 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
CUX1P39880 MIR23B-201ENST00000384832 97 ntBASIC7.75□□□□□ -1.17
CUX1P39880 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC7.75□□□□□ -1.17
CUX1P39880 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC7.75□□□□□ -1.17
CUX1P39880 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC7.75□□□□□ -1.17
CUX1P39880 PPM1AP1-201ENST00000502740 1135 ntBASIC7.75□□□□□ -1.17
CUX1P39880 RNA5SP116-201ENST00000516132 98 ntBASIC7.75□□□□□ -1.17
CUX1P39880 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC7.75□□□□□ -1.17
CUX1P39880 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC7.75□□□□□ -1.17
CUX1P39880 CCDC58P3-201ENST00000590792 430 ntBASIC7.75□□□□□ -1.17
CUX1P39880 AC022916.3-201ENST00000592961 742 ntBASIC7.75□□□□□ -1.17
CUX1P39880 BNIP3P33-201ENST00000598912 569 ntBASIC7.75□□□□□ -1.17
CUX1P39880 AC245389.1-201ENST00000605141 529 ntBASIC7.75□□□□□ -1.17
CUX1P39880 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CUX1P39880 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC7.75□□□□□ -1.17
CUX1P39880 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CUX1P39880 AL592182.3-201ENST00000642132 3304 ntBASIC7.75□□□□□ -1.17
CUX1P39880 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC7.75□□□□□ -1.17
CUX1P39880 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CUX1P39880 RNU1-64P-201ENST00000365443 163 ntBASIC7.74□□□□□ -1.17
CUX1P39880 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC7.74□□□□□ -1.17
CUX1P39880 TEX41-203ENST00000420472 765 ntTSL 3 BASIC7.74□□□□□ -1.17
CUX1P39880 BMS1P19-201ENST00000433925 393 ntBASIC7.74□□□□□ -1.17
CUX1P39880 RN7SL691P-201ENST00000494487 301 ntBASIC7.74□□□□□ -1.17
CUX1P39880 MED28P5-201ENST00000528254 438 ntBASIC7.74□□□□□ -1.17
CUX1P39880 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC7.74□□□□□ -1.17
CUX1P39880 Z95327.3-201ENST00000610385 572 ntBASIC7.74□□□□□ -1.17
CUX1P39880 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CUX1P39880 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CUX1P39880 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CUX1P39880 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CUX1P39880 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CUX1P39880 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC7.74□□□□□ -1.17
CUX1P39880 DMD-205ENST00000359836 7339 ntTSL 5 BASIC7.73□□□□□ -1.17
CUX1P39880 AL583835.1-201ENST00000399570 407 ntBASIC7.73□□□□□ -1.17
CUX1P39880 RPL21P67-201ENST00000402896 478 ntBASIC7.73□□□□□ -1.17
CUX1P39880 AP000580.1-201ENST00000404439 358 ntBASIC7.73□□□□□ -1.17
CUX1P39880 E2F6P2-201ENST00000420708 748 ntBASIC7.73□□□□□ -1.17
CUX1P39880 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC7.73□□□□□ -1.17
CUX1P39880 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC7.73□□□□□ -1.17
CUX1P39880 PSMB7P1-201ENST00000556349 514 ntBASIC7.73□□□□□ -1.17
CUX1P39880 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC7.73□□□□□ -1.17
CUX1P39880 RPL7P50-201ENST00000600588 727 ntBASIC7.73□□□□□ -1.17
CUX1P39880 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC7.73□□□□□ -1.17
CUX1P39880 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC7.73□□□□□ -1.17
CUX1P39880 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC7.73□□□□□ -1.17
CUX1P39880 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CUX1P39880 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC7.73□□□□□ -1.17
CUX1P39880 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
CUX1P39880 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CUX1P39880 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CUX1P39880 AL359837.1-201ENST00000381357 287 ntBASIC7.73□□□□□ -1.17
CUX1P39880 RNU11-201ENST00000387069 134 ntBASIC7.73□□□□□ -1.17
CUX1P39880 RPS26P8-201ENST00000393490 348 ntBASIC7.73□□□□□ -1.17
CUX1P39880 AL445189.1-201ENST00000405722 338 ntBASIC7.73□□□□□ -1.17
CUX1P39880 TMBIM7P-201ENST00000418074 855 ntBASIC7.73□□□□□ -1.17
CUX1P39880 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC7.73□□□□□ -1.17
CUX1P39880 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC7.73□□□□□ -1.17
CUX1P39880 AC053481.1-201ENST00000467217 306 ntBASIC7.73□□□□□ -1.17
CUX1P39880 RN7SL703P-201ENST00000578485 302 ntBASIC7.73□□□□□ -1.17
CUX1P39880 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC7.73□□□□□ -1.17
CUX1P39880 AL360012.1-201ENST00000602813 131 ntBASIC7.73□□□□□ -1.17
CUX1P39880 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
CUX1P39880 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CUX1P39880 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 CPHL1P-201ENST00000461341 3407 ntBASIC7.72□□□□□ -1.17
CUX1P39880 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
CUX1P39880 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
CUX1P39880 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC7.72□□□□□ -1.17
CUX1P39880 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC7.72□□□□□ -1.17
CUX1P39880 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
CUX1P39880 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
CUX1P39880 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CUX1P39880 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 AC079777.1-201ENST00000623836 1953 ntBASIC7.72□□□□□ -1.17
CUX1P39880 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 FTO-203ENST00000460382 1517 ntTSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 MGP-201ENST00000228938 694 ntTSL 3 BASIC7.72□□□□□ -1.17
CUX1P39880 MIR383-201ENST00000362257 73 ntBASIC7.72□□□□□ -1.17
CUX1P39880 RN7SKP224-201ENST00000364140 325 ntBASIC7.72□□□□□ -1.17
CUX1P39880 SDHCP2-201ENST00000398565 501 ntBASIC7.72□□□□□ -1.17
CUX1P39880 HSFY6P-201ENST00000445573 403 ntBASIC7.72□□□□□ -1.17
CUX1P39880 APOA2-207ENST00000470459 416 ntTSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 AC105137.1-201ENST00000484355 562 ntBASIC7.72□□□□□ -1.17
CUX1P39880 EEF1A1P25-201ENST00000495704 1267 ntBASIC7.72□□□□□ -1.17
CUX1P39880 ARL1-211ENST00000551828 776 ntTSL 5 BASIC7.72□□□□□ -1.17
CUX1P39880 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
CUX1P39880 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
CUX1P39880 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
CUX1P39880 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
CUX1P39880 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
CUX1P39880 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms