Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL391684.1-202ENST00000641293 1636 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A3P25940 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A3P25940 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
COL5A3P25940 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.79□□□□□ -1.48
COL5A3P25940 RPS27AP11-201ENST00000402798 447 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 CR383656.1-201ENST00000484916 377 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 PPM1AP1-201ENST00000502740 1135 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 MYL12BP2-201ENST00000503948 512 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 SNORA31.9-201ENST00000516429 84 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A3P25940 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 MIR4429-201ENST00000580105 73 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A3P25940 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A3P25940 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A3P25940 OR2L1P-202ENST00000641567 1023 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL5A3P25940 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 AC007998.4-201ENST00000612496 2533 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 AL158163.1-201ENST00000603915 1649 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.78□□□□□ -1.48
COL5A3P25940 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
COL5A3P25940 AC005005.4-201ENST00000623789 16698 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.78□□□□□ -1.48
COL5A3P25940 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.78□□□□□ -1.48
COL5A3P25940 EIF4A1P3-201ENST00000411521 244 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 CYCSP19-201ENST00000411715 316 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 RPL36AP36-201ENST00000418616 301 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 NPM1P26-201ENST00000426339 738 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 RPL23AP43-201ENST00000446445 471 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 AC021660.1-201ENST00000465006 554 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 RPL35P6-201ENST00000490024 372 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 RPS27AP16-201ENST00000492222 470 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 AP000827.1-201ENST00000527814 258 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 AC006349.1-201ENST00000555526 235 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 AL161912.2-201ENST00000565707 3007 ntBASIC5.78□□□□□ -1.48
COL5A3P25940 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL5A3P25940 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL5A3P25940 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
COL5A3P25940 SPRR2C-201ENST00000290702 219 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 RN7SKP280-201ENST00000364196 304 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL5A3P25940 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.77□□□□□ -1.49
COL5A3P25940 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.77□□□□□ -1.49
COL5A3P25940 AC006130.2-201ENST00000586202 326 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 CCDC58P3-201ENST00000590792 430 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC113403.1-201ENST00000604910 193 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 LARP1BP1-201ENST00000506036 1359 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.77□□□□□ -1.49
COL5A3P25940 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.77□□□□□ -1.49
COL5A3P25940 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC5.77□□□□□ -1.49
COL5A3P25940 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 AC108467.2-201ENST00000617640 1597 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL5A3P25940 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL5A3P25940 OR5P1P-201ENST00000299512 925 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL5A3P25940 MIR23B-201ENST00000384832 97 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC025750.1-201ENST00000399891 379 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 TMBIM7P-201ENST00000418074 855 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 RRM2P4-201ENST00000441721 562 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.77□□□□□ -1.49
COL5A3P25940 TPT1P3-201ENST00000492841 512 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC098799.3-201ENST00000506095 438 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC105031.1-201ENST00000518550 476 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC025884.1-201ENST00000556034 378 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms