Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL355802.4-201ENST00000607635 548 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AL139407.1-201ENST00000613826 1175 ntBASIC5.08□□□□□ -1.6
MSH3P20585 BNIP3P41-202ENST00000616656 861 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AP000648.2-201ENST00000624182 404 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AL590396.2-201ENST00000636511 1041 ntBASIC5.08□□□□□ -1.6
MSH3P20585 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 AC104260.2-201ENST00000623551 3497 ntBASIC5.07□□□□□ -1.6
MSH3P20585 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 CASC19-221ENST00000641309 1382 ntBASIC5.07□□□□□ -1.6
MSH3P20585 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH3P20585 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH3P20585 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSH3P20585 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSH3P20585 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH3P20585 MTCO1P45-201ENST00000431457 267 ntBASIC5.07□□□□□ -1.6
MSH3P20585 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH3P20585 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH3P20585 RPL31P20-201ENST00000449593 360 ntBASIC5.07□□□□□ -1.6
MSH3P20585 AC092647.2-201ENST00000452998 253 ntBASIC5.07□□□□□ -1.6
MSH3P20585 AC239798.3-201ENST00000454459 408 ntBASIC5.07□□□□□ -1.6
MSH3P20585 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 AC097484.1-201ENST00000471148 389 ntBASIC5.07□□□□□ -1.6
MSH3P20585 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH3P20585 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH3P20585 AC008953.1-201ENST00000497334 318 ntBASIC5.07□□□□□ -1.6
MSH3P20585 PCNAP1-201ENST00000505363 709 ntBASIC5.07□□□□□ -1.6
MSH3P20585 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH3P20585 RN7SKP66-201ENST00000516681 231 ntBASIC5.07□□□□□ -1.6
MSH3P20585 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH3P20585 AC092490.3-201ENST00000545370 572 ntBASIC5.07□□□□□ -1.6
MSH3P20585 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH3P20585 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 AC011447.4-201ENST00000587562 111 ntBASIC5.07□□□□□ -1.6
MSH3P20585 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 BNIP3P19-201ENST00000605397 577 ntBASIC5.07□□□□□ -1.6
MSH3P20585 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH3P20585 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.07□□□□□ -1.6
MSH3P20585 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
MSH3P20585 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH3P20585 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.07□□□□□ -1.6
MSH3P20585 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC004817.4-201ENST00000602396 3625 ntBASIC5.06□□□□□ -1.6
MSH3P20585 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 MIR365B-201ENST00000362317 111 ntBASIC5.06□□□□□ -1.6
MSH3P20585 RN7SKP74-201ENST00000362849 309 ntBASIC5.06□□□□□ -1.6
MSH3P20585 U8.4-201ENST00000363626 134 ntBASIC5.06□□□□□ -1.6
MSH3P20585 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 RN7SKP114-201ENST00000410327 279 ntBASIC5.06□□□□□ -1.6
MSH3P20585 CTSL3P-202ENST00000412179 788 ntBASIC5.06□□□□□ -1.6
MSH3P20585 Z68694.1-201ENST00000413929 841 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 AC234781.4-201ENST00000419384 244 ntBASIC5.06□□□□□ -1.6
MSH3P20585 HSFY1P1-201ENST00000423928 1178 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC073508.1-201ENST00000428866 656 ntBASIC5.06□□□□□ -1.6
MSH3P20585 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms