Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 HMGB3P13-201ENST00000511263 607 ntBASIC3.7□□□□□ -1.82
HLA-DQA1P01909 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 DPPA2P4-201ENST00000563717 878 ntBASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AP005119.2-201ENST00000579735 1105 ntBASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AC087783.2-201ENST00000605070 562 ntBASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AL118522.2-201ENST00000616045 615 ntBASIC3.7□□□□□ -1.82
HLA-DQA1P01909 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 MTND4P26-201ENST00000415971 1359 ntBASIC3.7□□□□□ -1.82
HLA-DQA1P01909 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HLA-DQA1P01909 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 OR10AB1P-202ENST00000641219 1686 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 RNU4-23P-201ENST00000362839 140 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 LRRC37BP1-201ENST00000398851 714 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 ZNF736P10Y-201ENST00000403990 1110 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 RPL23AP19-201ENST00000436229 369 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC073052.1-201ENST00000440417 714 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 RPS11P7-201ENST00000442125 465 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC064862.4-201ENST00000442180 334 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL161636.2-201ENST00000445179 927 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 TDGF1P1-201ENST00000445734 527 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 HMGN1P36-201ENST00000446623 298 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC104634.1-201ENST00000452720 462 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 FGF7P3-201ENST00000454645 303 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 RPL31P53-201ENST00000457065 348 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 PSMC1P13-201ENST00000458195 985 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 RN7SL799P-201ENST00000475891 298 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC117394.1-201ENST00000477323 567 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 RNU6-551P-201ENST00000516661 103 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 Y_RNA.719-201ENST00000517156 106 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 SMARCE1P3-201ENST00000553649 1231 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 FAM106CP-201ENST00000582212 507 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL592494.3-201ENST00000609485 464 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AP005131.7-201ENST00000610087 611 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC015722.2-201ENST00000622210 551 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AC012414.7-202ENST00000622705 1090 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 CU639417.4-201ENST00000623928 207 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AL356317.1-201ENST00000396110 1436 ntBASIC3.69□□□□□ -1.82
HLA-DQA1P01909 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HLA-DQA1P01909 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.68□□□□□ -1.82
HLA-DQA1P01909 MIR365B-201ENST00000362317 111 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms