Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHOX2O60902 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHOX2O60902 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
SHOX2O60902 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SHOX2O60902 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.84□□□□□ -1.63
SHOX2O60902 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.84□□□□□ -1.63
SHOX2O60902 IQCB2P-201ENST00000401788 1633 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHOX2O60902 AC235565.1-201ENST00000456962 1325 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHOX2O60902 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SHOX2O60902 RNA5SP513-201ENST00000364648 118 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AL353625.1-202ENST00000366273 571 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 SNORA70.10-201ENST00000384515 134 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHOX2O60902 AC002504.1-201ENST00000438281 691 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC073109.1-201ENST00000445066 978 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC4.84□□□□□ -1.63
SHOX2O60902 RPL7L1P1-201ENST00000448259 785 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 RPL31P15-201ENST00000449770 338 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AL451050.1-201ENST00000450126 415 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC093270.2-201ENST00000486157 792 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.84□□□□□ -1.63
SHOX2O60902 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC006499.6-201ENST00000511169 607 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC112191.2-201ENST00000522428 333 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SHOX2O60902 HMGB1P40-201ENST00000525121 540 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.84□□□□□ -1.63
SHOX2O60902 MIR1273E-201ENST00000581165 102 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.84□□□□□ -1.63
SHOX2O60902 MIR4505-201ENST00000582238 73 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC4.84□□□□□ -1.63
SHOX2O60902 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC010809.3-201ENST00000621310 641 ntBASIC4.84□□□□□ -1.63
SHOX2O60902 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SHOX2O60902 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
SHOX2O60902 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.84□□□□□ -1.63
SHOX2O60902 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHOX2O60902 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.84□□□□□ -1.64
SHOX2O60902 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SHOX2O60902 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SHOX2O60902 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
SHOX2O60902 TTC39DP-201ENST00000416781 1688 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 VN2R3P-201ENST00000422626 1412 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SHOX2O60902 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
SHOX2O60902 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 OR52B1P-201ENST00000316506 909 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 RNA5SP234-201ENST00000363916 119 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RNA5SP510-201ENST00000364697 99 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RNA5SP151-201ENST00000365632 117 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 SSX3-202ENST00000376893 800 ntTSL 2 BASIC4.83□□□□□ -1.64
SHOX2O60902 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SHOX2O60902 MIR513A2-201ENST00000385249 127 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 VN1R8P-201ENST00000407739 893 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.83□□□□□ -1.64
SHOX2O60902 BMS1P17-202ENST00000416720 316 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 NANOGP6-201ENST00000429190 847 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.83□□□□□ -1.64
SHOX2O60902 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.83□□□□□ -1.64
SHOX2O60902 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.83□□□□□ -1.64
SHOX2O60902 FGF7P3-201ENST00000454645 303 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.83□□□□□ -1.64
SHOX2O60902 AC091153.1-201ENST00000466297 402 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RN7SL51P-201ENST00000468230 285 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RPS26P39-201ENST00000469206 341 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RPL7P6-201ENST00000480903 738 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 AC090013.1-201ENST00000485147 480 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
SHOX2O60902 PSMA2P2-201ENST00000504319 686 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RNU6-709P-201ENST00000517257 104 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC4.83□□□□□ -1.64
SHOX2O60902 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.83□□□□□ -1.64
SHOX2O60902 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.83□□□□□ -1.64
SHOX2O60902 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC4.83□□□□□ -1.64
SHOX2O60902 RPL10P14-201ENST00000565265 298 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.83□□□□□ -1.64
SHOX2O60902 AC116651.1-201ENST00000609724 556 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 AL356752.1-201ENST00000615844 593 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 RMST_9.1-201ENST00000619945 193 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 AC007683.2-201ENST00000624681 714 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms