Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC004074.1-201ENST00000421810 1063 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 MTCO1P43-201ENST00000431831 488 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC000041.1-201ENST00000439655 175 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC093392.2-201ENST00000450682 337 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 RPL5P32-201ENST00000454085 879 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC008280.2-201ENST00000455473 307 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC073594.1-201ENST00000462065 364 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC117522.1-201ENST00000509821 380 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 OR5H4P-201ENST00000510851 923 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 HMGB1P47-201ENST00000511281 589 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 RNA5SP206-201ENST00000516703 121 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 HIGD1AP10-201ENST00000527837 282 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 OR6M2P-201ENST00000529831 871 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AP001858.2-201ENST00000536213 601 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AL049779.3-201ENST00000557141 606 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AL020997.3-201ENST00000602843 359 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AP001836.1-201ENST00000604675 523 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 Z99129.1-201ENST00000612510 255 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 LINC01613-201ENST00000561476 2780 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AL929601.4-201ENST00000613011 1341 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC016716.1-201ENST00000265882 708 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 MTHFD2P5-201ENST00000320415 844 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 Y_RNA.359-201ENST00000365498 102 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 ATP5F1P4-201ENST00000397288 746 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC136624.1-201ENST00000400791 413 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 RPS27AP7-201ENST00000422792 455 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC094019.1-201ENST00000434678 472 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 GAPDHP23-201ENST00000444823 993 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AL133351.3-201ENST00000454998 193 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 TRBV5-2-201ENST00000489095 273 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC026414.1-201ENST00000504046 698 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 SNX18P24-201ENST00000505249 671 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 NACAP5-201ENST00000509863 636 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 MRPS5P3-201ENST00000515577 166 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 SCARNA15.1-201ENST00000516384 125 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC005034.4-201ENST00000603612 899 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 CLPTM1LP1-201ENST00000604519 484 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC015849.2-201ENST00000605738 409 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC016877.3-201ENST00000606778 504 ntBASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms