Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC021146.3-201ENST00000511911 260 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC42Q96M95 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC42Q96M95 CYCSP28-201ENST00000534284 321 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC42Q96M95 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC42Q96M95 AP001521.2-201ENST00000608772 546 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 AC007497.1-201ENST00000610421 561 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 uc_338.18-201ENST00000615451 175 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 CR381572.2-201ENST00000624852 397 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC42Q96M95 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 MAPK10-286ENST00000641208 8747 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC42Q96M95 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC42Q96M95 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.1□□□□□ -1.59
CCDC42Q96M95 AP001273.1-201ENST00000624493 3152 ntBASIC5.1□□□□□ -1.59
CCDC42Q96M95 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC42Q96M95 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC42Q96M95 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 HSPD1P14-201ENST00000432666 1618 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 IL6STP1-201ENST00000346911 1020 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 RN7SKP15-201ENST00000364742 309 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC42Q96M95 AP002530.1-201ENST00000405705 684 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 AL450263.2-201ENST00000439400 589 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 SLC25A18P1-201ENST00000449385 454 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 AC022882.1-201ENST00000532142 501 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 AC015912.2-201ENST00000571053 181 ntBASIC5.09□□□□□ -1.59
CCDC42Q96M95 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
CCDC42Q96M95 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC42Q96M95 AC005332.5-201ENST00000591222 2919 ntBASIC5.09□□□□□ -1.6
CCDC42Q96M95 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC42Q96M95 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AP001002.1-201ENST00000625148 1513 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 OR51H2P-202ENST00000641424 3046 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 MTCO1P22-201ENST00000604619 1360 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AL590762.2-201ENST00000395798 571 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 Z74021.1-201ENST00000423610 407 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 RPL7P11-201ENST00000437586 658 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC144530.1-201ENST00000452862 555 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC005008.1-201ENST00000456151 612 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 RN7SL174P-201ENST00000475578 289 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 RN7SL817P-201ENST00000480777 288 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 NIP7P2-201ENST00000485801 544 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 RN7SL30P-201ENST00000488416 306 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC140172.1-201ENST00000502928 141 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 ARL4AP1-201ENST00000503220 705 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC004980.4-201ENST00000513375 203 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 RNA5SP360-201ENST00000516555 118 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC209154.1-201ENST00000582156 337 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AC233280.2-201ENST00000603917 1070 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AL034374.2-201ENST00000605281 548 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AL353600.1-201ENST00000608148 251 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AL596275.2-204ENST00000641628 552 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AL596275.2-206ENST00000641957 626 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 AL355852.1-201ENST00000454081 1771 ntBASIC5.08□□□□□ -1.6
CCDC42Q96M95 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC42Q96M95 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC42Q96M95 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
CCDC42Q96M95 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC42Q96M95 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC42Q96M95 PABPC1P6-201ENST00000445594 1829 ntBASIC5.07□□□□□ -1.6
CCDC42Q96M95 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC42Q96M95 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC42Q96M95 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC42Q96M95 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC42Q96M95 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC42Q96M95 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC42Q96M95 RNU1-20P-201ENST00000363314 162 ntBASIC5.07□□□□□ -1.6
CCDC42Q96M95 AC114755.2-201ENST00000413520 361 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms