Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 U3.23-201ENST00000391132 200 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 RPS29P17-201ENST00000430795 166 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AC099670.2-201ENST00000435130 321 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AL133372.1-201ENST00000493565 745 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 WDR61-205ENST00000558459 884 ntTSL 3 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 BNIP3P11-201ENST00000603878 563 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AL133243.1-201ENST00000614487 366 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AC009237.10-201ENST00000414112 510 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AC009237.5-201ENST00000414271 501 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 PRSS3P4-201ENST00000453323 162 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 RNU6-709P-201ENST00000517257 104 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 OR5D2P-201ENST00000524390 911 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AC020634.1-201ENST00000608701 549 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AL139124.1-201ENST00000609123 421 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 OR14L1P-202ENST00000641545 3009 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 AL137058.3-201ENST00000624531 3099 ntBASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
ALMS1Q8TCU4 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 MAPK10-372ENST00000641954 3413 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AL390879.1-201ENST00000439143 386 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AC068870.3-201ENST00000625077 2536 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 DSTNP2-201ENST00000504533 515 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 MIR4472-2-201ENST00000582069 67 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AL139039.2-201ENST00000407436 479 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 MTCO1P35-201ENST00000515270 228 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 SCARNA13-201ENST00000516672 275 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 IGKV2-23-201ENST00000518729 323 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 AC108359.1-201ENST00000616451 1211 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 MIR6133-201ENST00000617057 108 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 CDRT1-208ENST00000630868 794 ntBASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
ALMS1Q8TCU4 PPIAP31-201ENST00000405422 495 ntBASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AL356095.1-201ENST00000417217 199 ntBASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC009238.2-201ENST00000431026 355 ntBASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC091868.1-201ENST00000508746 304 ntBASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC017104.4-201ENST00000636283 1592 ntBASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC010733.2-201ENST00000589496 5702 ntBASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ALMS1Q8TCU4 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms