Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 LRRC37BP1-201ENST00000398851 714 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 RN7SKP267-201ENST00000410381 285 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 RPL12P9-201ENST00000412942 488 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AP001324.1-201ENST00000428553 399 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 HNRNPRP2-201ENST00000528421 743 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AC100847.1-201ENST00000611316 481 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AL445567.2-201ENST00000618935 498 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AC087821.1-201ENST00000623639 567 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 MIR492-201ENST00000638676 116 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AC133552.1-201ENST00000569988 4007 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 AL360270.2-201ENST00000562952 5985 ntBASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 ADAM5-202ENST00000399789 1942 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AL356095.1-201ENST00000417217 199 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 snoU13.22-201ENST00000459428 104 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC104763.1-201ENST00000475274 360 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 RN7SL176P-201ENST00000580352 264 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC093765.1-201ENST00000603758 881 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AP003497.2-201ENST00000624220 967 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC004158.1-201ENST00000564508 4319 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 ATP5HP3-201ENST00000396994 486 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AL022722.2-201ENST00000402519 180 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC011933.1-201ENST00000413334 321 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 GAPDHP49-201ENST00000421421 961 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AL451062.2-201ENST00000427515 271 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 COX6CP13-201ENST00000428703 226 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC116533.1-201ENST00000459748 321 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 RPL21P126-201ENST00000470049 478 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 SNORA31.9-201ENST00000516429 84 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 RNU6-709P-201ENST00000517257 104 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 MTCO1P49-201ENST00000523429 802 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 AC034229.5-201ENST00000624258 185 ntBASIC5.88□□□□□ -1.47
CCDC88AQ3V6T2 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC239868.2-201ENST00000564237 4527 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 RNA5SP187-201ENST00000384400 119 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC015795.1-201ENST00000513669 327 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 IGLVIV-65-201ENST00000517313 360 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC106785.1-201ENST00000565935 262 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC243960.7-201ENST00000623532 707 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC011447.7-201ENST00000624228 1590 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 STX3-208ENST00000641815 3236 ntBASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC88AQ3V6T2 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 AC005261.4-201ENST00000600047 1385 ntBASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC88AQ3V6T2 TLK1P1-201ENST00000456760 2440 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms