Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USF1P22415 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USF1P22415 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USF1P22415 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USF1P22415 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USF1P22415 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.33□□□□□ -1.72
USF1P22415 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
USF1P22415 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.33□□□□□ -1.72
USF1P22415 AL606537.1-201ENST00000607258 2011 ntBASIC4.33□□□□□ -1.72
USF1P22415 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
USF1P22415 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.32□□□□□ -1.72
USF1P22415 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.32□□□□□ -1.72
USF1P22415 MTCO1P22-201ENST00000604619 1360 ntBASIC4.32□□□□□ -1.72
USF1P22415 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
USF1P22415 AC022417.1-201ENST00000624768 1303 ntBASIC4.32□□□□□ -1.72
USF1P22415 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.32□□□□□ -1.72
USF1P22415 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 RPS4XP9-201ENST00000405151 780 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC016397.1-201ENST00000412463 242 ntBASIC4.32□□□□□ -1.72
USF1P22415 FAR2P2-201ENST00000413041 594 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.32□□□□□ -1.72
USF1P22415 CHEK2P3-201ENST00000416118 248 ntBASIC4.32□□□□□ -1.72
USF1P22415 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.32□□□□□ -1.72
USF1P22415 OR2AM1P-201ENST00000422137 422 ntBASIC4.32□□□□□ -1.72
USF1P22415 FAR2P4-202ENST00000425399 584 ntBASIC4.32□□□□□ -1.72
USF1P22415 HMGB1P32-201ENST00000425971 565 ntBASIC4.32□□□□□ -1.72
USF1P22415 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.32□□□□□ -1.72
USF1P22415 OR6C71P-201ENST00000432580 913 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.32□□□□□ -1.72
USF1P22415 KNOP1P3-201ENST00000446933 426 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.32□□□□□ -1.72
USF1P22415 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.32□□□□□ -1.72
USF1P22415 MORF4L1P4-201ENST00000450245 976 ntBASIC4.32□□□□□ -1.72
USF1P22415 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.32□□□□□ -1.72
USF1P22415 AP000942.1-201ENST00000463969 747 ntBASIC4.32□□□□□ -1.72
USF1P22415 RN7SL738P-201ENST00000470264 297 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC140172.1-201ENST00000502928 141 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.32□□□□□ -1.72
USF1P22415 OR51K1P-201ENST00000510214 950 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC016559.2-201ENST00000510759 359 ntBASIC4.32□□□□□ -1.72
USF1P22415 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.32□□□□□ -1.72
USF1P22415 AC137768.1-201ENST00000549998 553 ntBASIC4.32□□□□□ -1.72
USF1P22415 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 LSM3P2-201ENST00000551246 273 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC063949.1-201ENST00000552900 865 ntBASIC4.32□□□□□ -1.72
USF1P22415 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.32□□□□□ -1.72
USF1P22415 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
USF1P22415 MIR4691-201ENST00000583764 85 ntBASIC4.32□□□□□ -1.72
USF1P22415 AP005212.4-201ENST00000614206 710 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC006840.1-201ENST00000623069 542 ntBASIC4.32□□□□□ -1.72
USF1P22415 AC007996.1-201ENST00000620414 2821 ntBASIC4.32□□□□□ -1.72
USF1P22415 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USF1P22415 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.32□□□□□ -1.72
USF1P22415 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.32□□□□□ -1.72
USF1P22415 MAPK10-286ENST00000641208 8747 ntBASIC4.32□□□□□ -1.72
USF1P22415 RLIMP2-201ENST00000427891 1563 ntBASIC4.31□□□□□ -1.72
USF1P22415 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 ADAM5-202ENST00000399789 1942 ntBASIC4.31□□□□□ -1.72
USF1P22415 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USF1P22415 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USF1P22415 OR9G4-201ENST00000302957 984 ntBASIC4.31□□□□□ -1.72
USF1P22415 Y_RNA.62-201ENST00000362840 99 ntBASIC4.31□□□□□ -1.72
USF1P22415 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 MIR192-201ENST00000384915 110 ntBASIC4.31□□□□□ -1.72
USF1P22415 AP002530.1-201ENST00000405705 684 ntBASIC4.31□□□□□ -1.72
USF1P22415 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.31□□□□□ -1.72
USF1P22415 RN7SKP114-201ENST00000410327 279 ntBASIC4.31□□□□□ -1.72
USF1P22415 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.31□□□□□ -1.72
USF1P22415 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.31□□□□□ -1.72
USF1P22415 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.31□□□□□ -1.72
USF1P22415 MTCYBP14-201ENST00000457471 715 ntBASIC4.31□□□□□ -1.72
USF1P22415 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 COX6B1P5-201ENST00000509843 249 ntBASIC4.31□□□□□ -1.72
USF1P22415 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 AC092709.1-201ENST00000521355 1045 ntBASIC4.31□□□□□ -1.72
USF1P22415 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.31□□□□□ -1.72
USF1P22415 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.31□□□□□ -1.72
USF1P22415 OR7E128P-201ENST00000532736 1024 ntBASIC4.31□□□□□ -1.72
USF1P22415 AC008147.3-201ENST00000548666 354 ntBASIC4.31□□□□□ -1.72
USF1P22415 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.31□□□□□ -1.72
USF1P22415 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.31□□□□□ -1.72
USF1P22415 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC4.31□□□□□ -1.72
USF1P22415 MTCYBP13-201ENST00000578634 1093 ntBASIC4.31□□□□□ -1.72
USF1P22415 SNORD39.2-201ENST00000579995 76 ntBASIC4.31□□□□□ -1.72
USF1P22415 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 AC124856.1-201ENST00000600819 896 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms