Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRIM60P17-201ENST00000415181 719 ntBASIC5.09□□□□□ -1.59
MSH3P20585 RAB9AP4-201ENST00000415230 609 ntBASIC5.09□□□□□ -1.59
MSH3P20585 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 AC005033.1-201ENST00000428904 813 ntBASIC5.09□□□□□ -1.59
MSH3P20585 AC009238.2-201ENST00000431026 355 ntBASIC5.09□□□□□ -1.59
MSH3P20585 HSFY7P-201ENST00000432672 318 ntBASIC5.09□□□□□ -1.59
MSH3P20585 HSFY8P-201ENST00000437934 318 ntBASIC5.09□□□□□ -1.59
MSH3P20585 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 AC012512.1-201ENST00000446594 718 ntBASIC5.09□□□□□ -1.59
MSH3P20585 HSFY5P-201ENST00000453726 309 ntBASIC5.09□□□□□ -1.59
MSH3P20585 MTND2P30-201ENST00000456663 382 ntBASIC5.09□□□□□ -1.59
MSH3P20585 AC091180.1-201ENST00000462104 372 ntBASIC5.09□□□□□ -1.59
MSH3P20585 RN7SL443P-201ENST00000464331 290 ntBASIC5.09□□□□□ -1.59
MSH3P20585 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 AC015908.1-201ENST00000478739 476 ntBASIC5.09□□□□□ -1.59
MSH3P20585 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH3P20585 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.09□□□□□ -1.59
MSH3P20585 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.09□□□□□ -1.59
MSH3P20585 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 RN7SKP260-201ENST00000516907 149 ntBASIC5.09□□□□□ -1.59
MSH3P20585 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH3P20585 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 AL121839.1-201ENST00000556233 1185 ntBASIC5.09□□□□□ -1.59
MSH3P20585 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 TAS2R6P-201ENST00000605022 826 ntBASIC5.09□□□□□ -1.59
MSH3P20585 AC018695.5-201ENST00000605872 315 ntBASIC5.09□□□□□ -1.59
MSH3P20585 AC009163.6-201ENST00000612367 342 ntBASIC5.09□□□□□ -1.59
MSH3P20585 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
MSH3P20585 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
MSH3P20585 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
MSH3P20585 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
MSH3P20585 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
MSH3P20585 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 TTC39DP-201ENST00000416781 1688 ntBASIC5.08□□□□□ -1.6
MSH3P20585 MTND5P23-201ENST00000430812 1655 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AC245100.2-201ENST00000454544 1679 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 DDX6P1-205ENST00000441966 1436 ntBASIC5.08□□□□□ -1.6
MSH3P20585 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 AC083899.2-201ENST00000423285 1376 ntBASIC5.08□□□□□ -1.6
MSH3P20585 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 AL035079.1-201ENST00000405210 287 ntBASIC5.08□□□□□ -1.6
MSH3P20585 RNA5SP296-201ENST00000410523 111 ntBASIC5.08□□□□□ -1.6
MSH3P20585 RNU2-22P-201ENST00000411266 212 ntBASIC5.08□□□□□ -1.6
MSH3P20585 RN7SKP273-201ENST00000411392 314 ntBASIC5.08□□□□□ -1.6
MSH3P20585 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.08□□□□□ -1.6
MSH3P20585 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
MSH3P20585 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH3P20585 MTCO1P51-201ENST00000427672 1060 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH3P20585 AC023141.6-201ENST00000429418 337 ntBASIC5.08□□□□□ -1.6
MSH3P20585 UBE2V1P6-201ENST00000430840 422 ntBASIC5.08□□□□□ -1.6
MSH3P20585 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 EEF1B2P5-201ENST00000444820 548 ntBASIC5.08□□□□□ -1.6
MSH3P20585 MYO5BP2-201ENST00000449815 1277 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AC005532.2-201ENST00000467154 373 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH3P20585 RN7SL799P-201ENST00000475891 298 ntBASIC5.08□□□□□ -1.6
MSH3P20585 RN7SL214P-201ENST00000487317 265 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 AC108157.1-201ENST00000510511 539 ntBASIC5.08□□□□□ -1.6
MSH3P20585 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.08□□□□□ -1.6
MSH3P20585 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH3P20585 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH3P20585 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH3P20585 AP002373.2-201ENST00000541631 1060 ntBASIC5.08□□□□□ -1.6
MSH3P20585 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH3P20585 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH3P20585 MIR3691-201ENST00000578066 90 ntBASIC5.08□□□□□ -1.6
MSH3P20585 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH3P20585 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH3P20585 AL391001.1-201ENST00000602747 715 ntBASIC5.08□□□□□ -1.6
MSH3P20585 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms