Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 NIPA2P1-201ENST00000426223 976 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 NDUFA5P10-201ENST00000432147 357 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AL035246.1-201ENST00000433554 1255 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC138761.5-201ENST00000433967 325 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC099670.2-201ENST00000435130 321 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 PA2G4P6-201ENST00000438325 1197 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 NANOGP9-201ENST00000439890 892 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC023512.1-201ENST00000444513 499 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC069540.1-201ENST00000446320 988 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 TPT1P1-201ENST00000458495 518 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AL157777.1-201ENST00000468100 304 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 METTL15P1-201ENST00000481421 1045 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 RPS3AP15-201ENST00000483874 781 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC105233.1-201ENST00000498840 781 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC021146.5-201ENST00000503544 545 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC138832.1-201ENST00000522871 556 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC004825.1-201ENST00000555068 586 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AL450336.1-201ENST00000605180 586 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 RNU4-5P-201ENST00000607255 135 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AL157392.4-201ENST00000609756 345 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC087683.2-201ENST00000611384 326 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 OR11H2-202ENST00000641517 1085 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AC083843.2-201ENST00000568248 6253 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AL590763.1-201ENST00000398297 1545 ntBASIC5.47□□□□□ -1.53
VPS4AQ9UN37 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS4AQ9UN37 MAPK10-328ENST00000641553 4009 ntBASIC5.46□□□□□ -1.53
VPS4AQ9UN37 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.46□□□□□ -1.53
VPS4AQ9UN37 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
VPS4AQ9UN37 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 RNU2-22P-201ENST00000411266 212 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AK4P4-201ENST00000419465 646 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 PTP4A1P1-201ENST00000420539 515 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 XKRYP1-201ENST00000423438 492 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 XKRYP2-201ENST00000432915 492 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 OR7E116P-201ENST00000448529 957 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 MTND1P31-201ENST00000449206 961 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 GEMIN2P1-201ENST00000454246 752 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC239798.3-201ENST00000454459 408 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 OR11I1P-201ENST00000486033 954 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 RN7SL30P-201ENST00000488416 306 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC005412.2-201ENST00000492004 341 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 RN7SL57P-201ENST00000493687 290 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC006499.3-201ENST00000506077 748 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 GAPDHP62-201ENST00000515313 990 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 MTND2P38-201ENST00000522536 667 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 IGBP1P1-201ENST00000554337 1009 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AL049830.4-201ENST00000555149 351 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC090888.2-201ENST00000559765 1144 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 Z99289.3-201ENST00000605586 594 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AL365400.2-201ENST00000605604 902 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC025175.1-201ENST00000606482 759 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC106052.1-201ENST00000608029 497 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC019131.2-201ENST00000609071 870 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms