Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 FGF7P1-201ENST00000582820 288 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 EIF4A2P1-201ENST00000587313 1063 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC011891.2-201ENST00000604949 397 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC090186.1-201ENST00000605991 572 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL451074.6-201ENST00000608512 729 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC007603.3-201ENST00000636915 979 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 ADAM24P-201ENST00000398655 2101 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC090220.1-201ENST00000593078 1699 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 SGO1P2-201ENST00000429458 1589 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC004076.2-201ENST00000620532 3323 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 RNU1-49P-201ENST00000363468 159 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 U3.10-201ENST00000364459 214 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 SNORA43.1-201ENST00000364863 140 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 RNA5SP77-201ENST00000365394 120 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL157702.1-201ENST00000398764 426 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL133260.1-201ENST00000405720 405 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL590084.1-201ENST00000407885 387 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 RNU2-41P-201ENST00000410991 178 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 PGBD4P8-201ENST00000412993 562 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC245054.1-201ENST00000420944 258 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL354707.3-201ENST00000427308 331 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 NPM1P24-201ENST00000428039 894 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 RPS26P4-201ENST00000431743 355 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 BX119904.1-201ENST00000432026 348 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 ATP5HP2-201ENST00000433885 485 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC099670.1-201ENST00000455141 783 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 RNU6-956P-201ENST00000458868 103 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC004890.1-201ENST00000461005 181 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 ARL4AP1-201ENST00000503220 705 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 ARL4AP2-201ENST00000507378 601 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC098799.2-201ENST00000509466 868 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC074344.1-201ENST00000512823 224 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 FABP5P5-201ENST00000515537 406 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 RNU6-319P-201ENST00000516025 108 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 OR8L1P-201ENST00000534005 955 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC090181.2-201ENST00000602975 672 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 C8orf59P2-201ENST00000603441 271 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC012368.3-201ENST00000604190 219 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL138478.1-201ENST00000612252 832 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AC010133.1-201ENST00000615809 842 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL603750.1-201ENST00000624216 1717 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC39Q9UFE4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC39Q9UFE4 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC39Q9UFE4 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 AL161912.4-201ENST00000623889 2468 ntBASIC7□□□□□ -1.29
CCDC39Q9UFE4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC7□□□□□ -1.29
CCDC39Q9UFE4 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 PDZK1P1-202ENST00000425209 1350 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 AC137056.2-201ENST00000624055 1958 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 FGF7P2-201ENST00000332473 296 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 PSMA6P1-201ENST00000400275 741 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 MTND4P3-201ENST00000417829 541 ntBASIC6.99□□□□□ -1.29
CCDC39Q9UFE4 RPL7P53-201ENST00000421245 739 ntBASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms