Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CXCL12P48061 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
CXCL12P48061 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.86□□□□□ -1.63
CXCL12P48061 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 SNORA48.7-201ENST00000391302 135 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 LRRC37BP1-201ENST00000398851 714 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 AL357515.1-201ENST00000402967 542 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.86□□□□□ -1.63
CXCL12P48061 RN7SKP17-201ENST00000411242 351 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.86□□□□□ -1.63
CXCL12P48061 CDC27P1-201ENST00000445384 715 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 AC009963.4-201ENST00000448535 339 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 AC090804.1-201ENST00000448870 490 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.86□□□□□ -1.63
CXCL12P48061 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.86□□□□□ -1.63
CXCL12P48061 AC011276.1-201ENST00000469688 323 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 RN7SL817P-201ENST00000480777 288 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 RPL7AP10-201ENST00000481016 791 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC4.86□□□□□ -1.63
CXCL12P48061 AC106806.2-201ENST00000509365 500 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.86□□□□□ -1.63
CXCL12P48061 NPM1P6-201ENST00000521088 871 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 AC100784.1-201ENST00000522790 310 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 OR4A6P-201ENST00000534364 970 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.86□□□□□ -1.63
CXCL12P48061 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.86□□□□□ -1.63
CXCL12P48061 AC007224.1-201ENST00000564410 144 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 MIR3939-201ENST00000582614 106 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.86□□□□□ -1.63
CXCL12P48061 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.86□□□□□ -1.63
CXCL12P48061 BNIP3P33-201ENST00000598912 569 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.86□□□□□ -1.63
CXCL12P48061 AL353684.1-201ENST00000622677 1120 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
CXCL12P48061 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 AC002525.1-201ENST00000624392 1622 ntBASIC4.86□□□□□ -1.63
CXCL12P48061 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CXCL12P48061 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
CXCL12P48061 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CXCL12P48061 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL12P48061 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL12P48061 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.85□□□□□ -1.63
CXCL12P48061 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
CXCL12P48061 RNA5SP515-201ENST00000364570 118 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 OR1L6-202ENST00000373684 1044 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 MIR23A-201ENST00000385245 73 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 RNA5SP345-201ENST00000410646 108 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.85□□□□□ -1.63
CXCL12P48061 CYCSP11-201ENST00000436426 315 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 SCAND3P1-201ENST00000439854 1060 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 RN7SL197P-201ENST00000466981 299 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 NIP7P2-201ENST00000485801 544 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 IMPA1P1-201ENST00000510718 842 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 AC021193.1-201ENST00000511607 420 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL12P48061 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.85□□□□□ -1.63
CXCL12P48061 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.85□□□□□ -1.63
CXCL12P48061 AC084783.1-201ENST00000565846 910 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 AL121932.1-201ENST00000605542 214 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL12P48061 AL049536.1-201ENST00000625043 744 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.85□□□□□ -1.63
CXCL12P48061 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CXCL12P48061 AC120036.2-201ENST00000509729 1474 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 CCT8P1-201ENST00000413611 1657 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL12P48061 AL731566.1-201ENST00000620490 1937 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL12P48061 AC138907.8-201ENST00000623981 2256 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 AL137058.3-201ENST00000624531 3099 ntBASIC4.85□□□□□ -1.63
CXCL12P48061 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC4.85□□□□□ -1.63
CXCL12P48061 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CXCL12P48061 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 AC009951.1-201ENST00000623674 2614 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC007382.1-201ENST00000624376 2618 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 AC005261.6-201ENST00000623072 1387 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 RNA5SP509-201ENST00000364577 119 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 TRGV5P-201ENST00000419915 354 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms