Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.15□□□□□ -1.59
HNF4AP41235 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HNF4AP41235 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HNF4AP41235 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
HNF4AP41235 TCP1P3-201ENST00000414406 1498 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
HNF4AP41235 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.14□□□□□ -1.59
HNF4AP41235 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.14□□□□□ -1.59
HNF4AP41235 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 RNA5SP335-201ENST00000363817 110 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 SNORA27.3-201ENST00000364937 134 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 RN7SKP269-201ENST00000365545 319 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.14□□□□□ -1.59
HNF4AP41235 AL133325.1-201ENST00000421090 382 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.14□□□□□ -1.59
HNF4AP41235 TMX2P1-201ENST00000436507 708 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 OR52E3P-201ENST00000452083 936 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 RPL7P45-201ENST00000455851 743 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.14□□□□□ -1.59
HNF4AP41235 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 UBA52P3-201ENST00000491303 382 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AL049874.2-201ENST00000492636 288 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 RN7SL447P-201ENST00000494711 245 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 EIF3KP3-201ENST00000514461 639 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 RNU6-889P-201ENST00000517189 103 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.14□□□□□ -1.59
HNF4AP41235 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.14□□□□□ -1.59
HNF4AP41235 HMGB1P40-201ENST00000525121 540 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AP003168.1-201ENST00000530091 307 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AC012414.2-201ENST00000559474 187 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 MTCYBP13-201ENST00000578634 1093 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 MIR4472-2-201ENST00000582069 67 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.14□□□□□ -1.59
HNF4AP41235 AL354696.1-201ENST00000614652 497 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 MIR6839-201ENST00000620425 113 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AC091932.2-201ENST00000623014 291 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 AC074101.1-201ENST00000637861 241 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
HNF4AP41235 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 AC096656.1-201ENST00000623826 1364 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HNF4AP41235 AC073136.1-201ENST00000449426 2884 ntBASIC5.14□□□□□ -1.59
HNF4AP41235 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.14□□□□□ -1.59
HNF4AP41235 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HNF4AP41235 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.13□□□□□ -1.59
HNF4AP41235 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.13□□□□□ -1.59
HNF4AP41235 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HNF4AP41235 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.13□□□□□ -1.59
HNF4AP41235 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
HNF4AP41235 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HNF4AP41235 SMG1P4-204ENST00000523028 4131 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 AL034549.2-201ENST00000618285 3373 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.13□□□□□ -1.59
HNF4AP41235 AC005294.1-201ENST00000355509 281 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 RNA5SP132-201ENST00000364725 118 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 RNU6-146P-201ENST00000384602 108 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HNF4AP41235 AC009804.1-201ENST00000400949 179 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.13□□□□□ -1.59
HNF4AP41235 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.13□□□□□ -1.59
HNF4AP41235 AC019050.1-201ENST00000418508 492 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 AC079355.1-201ENST00000421770 223 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.13□□□□□ -1.59
HNF4AP41235 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.13□□□□□ -1.59
HNF4AP41235 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.13□□□□□ -1.59
HNF4AP41235 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.13□□□□□ -1.59
HNF4AP41235 AL133445.1-201ENST00000467051 452 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 AC058823.1-201ENST00000485315 474 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 RPL15P21-201ENST00000495592 567 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 AC108693.1-201ENST00000496068 432 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.13□□□□□ -1.59
HNF4AP41235 RPEP1-201ENST00000504507 658 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.13□□□□□ -1.59
HNF4AP41235 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.13□□□□□ -1.59
HNF4AP41235 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.13□□□□□ -1.59
HNF4AP41235 RNU6-941P-201ENST00000516346 108 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 SMARCE1P4-201ENST00000523647 241 ntBASIC5.13□□□□□ -1.59
HNF4AP41235 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.13□□□□□ -1.59
HNF4AP41235 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.13□□□□□ -1.59
HNF4AP41235 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.13□□□□□ -1.59
HNF4AP41235 AC009597.2-201ENST00000604659 592 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms