Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC7.83□□□□□ -1.16
CUX1P39880 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC7.83□□□□□ -1.16
CUX1P39880 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 TBCA-207ENST00000520039 157 ntTSL 3 BASIC7.83□□□□□ -1.16
CUX1P39880 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC7.83□□□□□ -1.16
CUX1P39880 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC7.83□□□□□ -1.16
CUX1P39880 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
CUX1P39880 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
CUX1P39880 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC7.83□□□□□ -1.16
CUX1P39880 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 ABCC13-202ENST00000463099 3842 ntBASIC7.83□□□□□ -1.16
CUX1P39880 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC7.83□□□□□ -1.16
CUX1P39880 ALB-202ENST00000401494 1659 ntTSL 5 BASIC7.83□□□□□ -1.16
CUX1P39880 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC7.83□□□□□ -1.16
CUX1P39880 RPS12P10-201ENST00000427031 377 ntBASIC7.83□□□□□ -1.16
CUX1P39880 TRGV7-201ENST00000427089 353 ntBASIC7.83□□□□□ -1.16
CUX1P39880 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC7.83□□□□□ -1.16
CUX1P39880 RPL23AP93-201ENST00000440847 484 ntBASIC7.83□□□□□ -1.16
CUX1P39880 AC114755.5-201ENST00000447760 831 ntBASIC7.83□□□□□ -1.16
CUX1P39880 RN7SL604P-201ENST00000492589 296 ntBASIC7.83□□□□□ -1.16
CUX1P39880 RN7SL810P-201ENST00000493031 276 ntBASIC7.83□□□□□ -1.16
CUX1P39880 AC010476.1-201ENST00000519111 851 ntBASIC7.83□□□□□ -1.16
CUX1P39880 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CUX1P39880 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC7.83□□□□□ -1.16
CUX1P39880 OR8B1P-202ENST00000641132 1178 ntBASIC7.83□□□□□ -1.16
CUX1P39880 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
CUX1P39880 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CUX1P39880 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
CUX1P39880 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CUX1P39880 AC090017.1-201ENST00000548612 1779 ntBASIC7.82□□□□□ -1.16
CUX1P39880 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CUX1P39880 RNA5SP453-201ENST00000362503 119 ntBASIC7.82□□□□□ -1.16
CUX1P39880 AL358176.3-201ENST00000420757 454 ntBASIC7.82□□□□□ -1.16
CUX1P39880 F11-205ENST00000492972 1204 ntTSL 2 BASIC7.82□□□□□ -1.16
CUX1P39880 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.82□□□□□ -1.16
CUX1P39880 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CUX1P39880 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CUX1P39880 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
CUX1P39880 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC7.81□□□□□ -1.16
CUX1P39880 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC7.81□□□□□ -1.16
CUX1P39880 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 ST7-212ENST00000422922 1887 ntTSL 5 BASIC7.81□□□□□ -1.16
CUX1P39880 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 AC008033.1-201ENST00000216407 1162 ntBASIC7.81□□□□□ -1.16
CUX1P39880 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 AC025750.1-201ENST00000399891 379 ntBASIC7.81□□□□□ -1.16
CUX1P39880 U3.35-201ENST00000408405 208 ntBASIC7.81□□□□□ -1.16
CUX1P39880 COX5BP7-201ENST00000414780 274 ntBASIC7.81□□□□□ -1.16
CUX1P39880 AP001324.1-201ENST00000428553 399 ntBASIC7.81□□□□□ -1.16
CUX1P39880 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC7.81□□□□□ -1.16
CUX1P39880 HMGB1P23-201ENST00000518743 568 ntBASIC7.81□□□□□ -1.16
CUX1P39880 FKBP1BP1-201ENST00000553366 325 ntBASIC7.81□□□□□ -1.16
CUX1P39880 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC7.81□□□□□ -1.16
CUX1P39880 MIR92B-201ENST00000607575 96 ntBASIC7.81□□□□□ -1.16
CUX1P39880 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC7.81□□□□□ -1.16
CUX1P39880 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.16
CUX1P39880 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CUX1P39880 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
CUX1P39880 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC7.8□□□□□ -1.16
CUX1P39880 LCMT1-AS2-202ENST00000565214 5666 ntBASIC7.8□□□□□ -1.16
CUX1P39880 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
CUX1P39880 AC025031.4-201ENST00000621248 3271 ntBASIC7.8□□□□□ -1.16
CUX1P39880 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC7.8□□□□□ -1.16
CUX1P39880 AL022722.2-201ENST00000402519 180 ntBASIC7.8□□□□□ -1.16
CUX1P39880 RNU6ATAC34P-201ENST00000408879 121 ntBASIC7.8□□□□□ -1.16
CUX1P39880 RPL23AP26-201ENST00000412728 464 ntBASIC7.8□□□□□ -1.16
CUX1P39880 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC7.8□□□□□ -1.16
CUX1P39880 RPL34P6-201ENST00000432390 345 ntBASIC7.8□□□□□ -1.16
CUX1P39880 CREM-230ENST00000474931 626 ntTSL 2 BASIC7.8□□□□□ -1.16
CUX1P39880 AP000827.1-201ENST00000527814 258 ntBASIC7.8□□□□□ -1.16
CUX1P39880 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
CUX1P39880 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CUX1P39880 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
CUX1P39880 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CUX1P39880 RNA5SP366-201ENST00000365454 123 ntBASIC7.79□□□□□ -1.16
CUX1P39880 SNORA48.7-201ENST00000391302 135 ntBASIC7.79□□□□□ -1.16
CUX1P39880 AC092162.1-201ENST00000432828 434 ntBASIC7.79□□□□□ -1.16
CUX1P39880 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC7.79□□□□□ -1.16
CUX1P39880 NUTF2P3-201ENST00000448540 384 ntBASIC7.79□□□□□ -1.16
CUX1P39880 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC7.79□□□□□ -1.16
CUX1P39880 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms