Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL049745.1-201ENST00000433953 286 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 ELOCP3-201ENST00000439303 348 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC009127.1-201ENST00000467090 155 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 AC022795.1-201ENST00000473808 480 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 RPL21P6-201ENST00000479171 504 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 AC090114.3-201ENST00000479267 829 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 AC083982.1-201ENST00000485679 344 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC091912.1-201ENST00000511351 248 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC110775.1-201ENST00000513721 462 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC134349.2-201ENST00000535136 910 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXD4P09016 FAM25E-202ENST00000608562 189 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 HPVC1-201ENST00000629899 1198 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC091948.2-201ENST00000636510 279 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC008079.2-201ENST00000623543 20396 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 MTND5P23-201ENST00000430812 1655 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 AC126323.6-202ENST00000568092 3511 ntBASIC4.72□□□□□ -1.65
HOXD4P09016 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
HOXD4P09016 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
HOXD4P09016 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXD4P09016 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.71□□□□□ -1.65
HOXD4P09016 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
HOXD4P09016 MUC2-202ENST00000613187 4845 ntBASIC4.71□□□□□ -1.65
HOXD4P09016 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
HOXD4P09016 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.71□□□□□ -1.65
HOXD4P09016 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
HOXD4P09016 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
HOXD4P09016 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
HOXD4P09016 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 Y_RNA.62-201ENST00000362840 99 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 BMS1P3-201ENST00000372011 932 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXD4P09016 RPS4XP16-201ENST00000427198 791 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.71□□□□□ -1.66
HOXD4P09016 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXD4P09016 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXD4P09016 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXD4P09016 KNOP1P3-201ENST00000446933 426 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 PRPF38AP1-201ENST00000451976 933 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 AL591473.1-201ENST00000464297 313 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 SEPT7P6-201ENST00000469999 1143 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXD4P09016 CEACAMP10-202ENST00000495431 496 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXD4P09016 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 COL6A4P2-205ENST00000509855 506 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AC016559.2-201ENST00000510759 359 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXD4P09016 OR5AZ1P-201ENST00000527448 943 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AP002373.2-201ENST00000541631 1060 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXD4P09016 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXD4P09016 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 AL049874.4-201ENST00000557593 255 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXD4P09016 MIR7853-201ENST00000584820 132 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AC011487.3-201ENST00000593607 453 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 RPL21P136-201ENST00000605378 396 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AC091953.3-201ENST00000623220 236 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AC010435.1-201ENST00000623353 1177 ntBASIC4.71□□□□□ -1.66
HOXD4P09016 AL163152.1-201ENST00000642001 374 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms