Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.36□□□□□ -1.39
COL3A1P02461 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL3A1P02461 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL3A1P02461 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
COL3A1P02461 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL3A1P02461 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL3A1P02461 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL3A1P02461 CCAT2-201ENST00000630920 1752 ntBASIC6.36□□□□□ -1.39
COL3A1P02461 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL3A1P02461 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.36□□□□□ -1.39
COL3A1P02461 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL3A1P02461 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL3A1P02461 PCAT14-202ENST00000627127 3935 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL3A1P02461 AL034370.1-201ENST00000397254 1590 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL3A1P02461 MTATP6P31-201ENST00000406985 692 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 PCNPP4-201ENST00000414817 517 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 CYCSP53-201ENST00000455540 265 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL3A1P02461 RN7SL459P-201ENST00000481078 302 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.35□□□□□ -1.39
COL3A1P02461 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.35□□□□□ -1.39
COL3A1P02461 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC6.35□□□□□ -1.39
COL3A1P02461 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.35□□□□□ -1.39
COL3A1P02461 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.35□□□□□ -1.39
COL3A1P02461 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC6.35□□□□□ -1.39
COL3A1P02461 SNORA74C-1-201ENST00000580726 201 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 MIR5096-201ENST00000583713 70 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 DNAJC19P3-201ENST00000594491 331 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 AC243960.7-201ENST00000623532 707 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.35□□□□□ -1.39
COL3A1P02461 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.35□□□□□ -1.39
COL3A1P02461 AL163152.1-201ENST00000642001 374 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL3A1P02461 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL3A1P02461 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL3A1P02461 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC6.35□□□□□ -1.39
COL3A1P02461 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.35□□□□□ -1.39
COL3A1P02461 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.35□□□□□ -1.39
COL3A1P02461 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
COL3A1P02461 AC024341.1-201ENST00000526444 1552 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL3A1P02461 AC020656.2-201ENST00000613291 5309 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 AL360270.2-201ENST00000562952 5985 ntBASIC6.35□□□□□ -1.39
COL3A1P02461 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.34□□□□□ -1.39
COL3A1P02461 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL3A1P02461 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL3A1P02461 RNA5SP332-201ENST00000391063 115 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.34□□□□□ -1.39
COL3A1P02461 AC092162.1-201ENST00000432828 434 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 AC016831.4-201ENST00000438302 307 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.34□□□□□ -1.39
COL3A1P02461 RN7SL354P-201ENST00000469282 294 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 RNU1-6P-201ENST00000516290 144 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 MTND2P38-201ENST00000522536 667 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC6.34□□□□□ -1.39
COL3A1P02461 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC6.34□□□□□ -1.39
COL3A1P02461 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.34□□□□□ -1.39
COL3A1P02461 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.34□□□□□ -1.39
COL3A1P02461 AC018552.1-201ENST00000562099 811 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC6.34□□□□□ -1.39
COL3A1P02461 AC242628.1-201ENST00000606810 391 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 MIR378J-201ENST00000611988 109 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 AC006249.1-201ENST00000621223 471 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 AC068057.2-201ENST00000624047 895 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.34□□□□□ -1.39
COL3A1P02461 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC6.34□□□□□ -1.39
COL3A1P02461 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
COL3A1P02461 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
COL3A1P02461 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.34□□□□□ -1.39
COL3A1P02461 AL022393.1-201ENST00000625142 1677 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 AL121950.1-201ENST00000624993 2077 ntBASIC6.34□□□□□ -1.39
COL3A1P02461 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC6.34□□□□□ -1.39
COL3A1P02461 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL3A1P02461 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.34□□□□□ -1.39
COL3A1P02461 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL3A1P02461 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL3A1P02461 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL3A1P02461 MTCO1P46-201ENST00000451639 1491 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 AC012618.3-205ENST00000637896 1496 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL3A1P02461 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL3A1P02461 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC6.34□□□□□ -1.4
COL3A1P02461 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL3A1P02461 AC013429.2-201ENST00000418798 781 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.34□□□□□ -1.4
COL3A1P02461 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC6.34□□□□□ -1.4
COL3A1P02461 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL3A1P02461 AC068587.2-201ENST00000478386 781 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC6.34□□□□□ -1.4
COL3A1P02461 OR8G5-201ENST00000524943 1041 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC6.34□□□□□ -1.4
COL3A1P02461 FKBP1BP1-201ENST00000553366 325 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 AC023158.1-201ENST00000561632 1025 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.34□□□□□ -1.4
COL3A1P02461 MIR4697-201ENST00000582977 78 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC6.34□□□□□ -1.4
COL3A1P02461 IGKV2OR2-2-201ENST00000605025 300 ntBASIC6.34□□□□□ -1.4
COL3A1P02461 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.34□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms