Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC016559.2-201ENST00000510759 359 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 DPPA3P2-201ENST00000553589 478 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AL669831.5-218ENST00000591702 1873 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC243960.7-201ENST00000623532 707 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 RNA5SP196-201ENST00000625967 102 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC025574.1-201ENST00000554784 1653 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 VN2R3P-201ENST00000422626 1412 ntBASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 RNU1-94P-201ENST00000362627 173 ntBASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 TRAV35-201ENST00000390462 330 ntBASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 ATP5F1P2-201ENST00000398143 760 ntBASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 RN7SL517P-201ENST00000462240 305 ntBASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 AC021422.1-201ENST00000621212 473 ntBASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 AL356863.1-201ENST00000623378 1080 ntBASIC6.15□□□□□ -1.42
SHANK3Q9BYB0 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
SHANK3Q9BYB0 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 RNU1-130P-201ENST00000363930 160 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 RPL23AP59-201ENST00000399415 461 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 NPM1P18-201ENST00000434232 732 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 AC069061.3-201ENST00000582254 823 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 AL160281.1-201ENST00000605307 311 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 AC099676.1-201ENST00000608886 657 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 Z95327.3-201ENST00000610385 572 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 PAPPA-AS1-201ENST00000445861 2450 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 Z95114.1-201ENST00000624264 14574 ntBASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SHANK3Q9BYB0 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 MIR554-201ENST00000384874 96 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 RPS3AP25-201ENST00000411660 793 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 FTH1P16-201ENST00000435241 552 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AGGF1P9-201ENST00000561884 913 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 MIR4420-201ENST00000583944 77 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AC090948.1-201ENST00000607464 549 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 ACTR3BP5-201ENST00000448440 1479 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AC032011.1-201ENST00000611703 1549 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 SNORA63.1-201ENST00000362493 131 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 OR1F12-201ENST00000402365 945 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 CYCSP19-201ENST00000411715 316 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 RPS21P8-201ENST00000413365 247 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 SLC4A1APP1-201ENST00000419995 602 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms