Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 SMG1P4-204ENST00000523028 4131 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 RNU6-729P-201ENST00000384399 107 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AL034403.1-201ENST00000399414 885 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AL355143.1-201ENST00000407101 841 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 BTF3P9-201ENST00000418784 283 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 SRSF1P1-201ENST00000424058 520 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AL121776.1-201ENST00000429337 372 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AL158053.1-201ENST00000441503 453 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 MTCYBP21-201ENST00000443300 1113 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC069277.2-201ENST00000454211 432 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC092691.2-201ENST00000461787 803 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC110749.1-201ENST00000462007 357 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 RN7SL214P-201ENST00000487317 265 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 RN7SL814P-201ENST00000487715 300 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC138866.2-201ENST00000508650 584 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 MTND5P21-201ENST00000531961 522 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC127024.5-201ENST00000580085 462 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 SNX6P1-201ENST00000601728 1224 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC120053.1-201ENST00000607706 736 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC090617.9-201ENST00000623751 147 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 AC107021.2-201ENST00000567714 2095 ntBASIC4.57□□□□□ -1.68
NKX3-1Q99801 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
NKX3-1Q99801 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NKX3-1Q99801 OR13C1P-202ENST00000641378 2919 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC100778.3-201ENST00000580060 1750 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AL672167.1-205ENST00000641112 3080 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 OR4K17-201ENST00000315543 1032 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 GCNT6-201ENST00000379591 934 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 MIR589-201ENST00000385238 99 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 MT-TP-201ENST00000387461 68 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 ATP5F1P6-201ENST00000402768 767 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 OR3A2-201ENST00000408891 1076 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 RN7SKP59-201ENST00000410520 314 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 RN7SKP293-201ENST00000411389 296 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 RPL26P37-201ENST00000411983 438 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 COX5BP7-201ENST00000414780 274 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 PCNPP4-201ENST00000414817 517 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC093084.1-201ENST00000424233 687 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC124944.2-201ENST00000429866 1242 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 NDUFA5P10-201ENST00000432147 357 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 PTP4A1P3-201ENST00000433661 420 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC093716.1-201ENST00000435923 377 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 MTCYBP29-201ENST00000436327 1006 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms