Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AL136455.1-201ENST00000441083 1240 ntBASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AP002812.1-201ENST00000495378 474 ntBASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AC016559.2-201ENST00000510759 359 ntBASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 RNA5SP397-201ENST00000391323 118 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 RNA5SP44-201ENST00000410446 133 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 QRSL1P2-201ENST00000418582 964 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 OR4C10P-201ENST00000434991 931 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC097523.2-201ENST00000435551 652 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC108751.3-201ENST00000461814 1020 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC040958.1-201ENST00000561102 201 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC004232.3-201ENST00000622977 525 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 CASC19-255ENST00000641733 1385 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 RPEP3-201ENST00000425462 676 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC006946.1-201ENST00000429106 328 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC010326.1-201ENST00000462726 602 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC093227.2-201ENST00000589357 285 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC010424.2-201ENST00000607594 443 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AL161637.1-201ENST00000622380 412 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 AC011815.3-201ENST00000624194 473 ntBASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC88AQ3V6T2 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AC120338.1-201ENST00000625074 1541 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 EEF1A1P1-201ENST00000447052 739 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AC106806.2-201ENST00000509365 500 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 RNU1-45P-201ENST00000517191 141 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 Z95327.3-201ENST00000610385 572 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AP000756.2-201ENST00000624168 2567 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AP000432.2-201ENST00000624164 2048 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AP001029.2-203ENST00000589795 4910 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 AC007382.1-201ENST00000624376 2618 ntBASIC5.93□□□□□ -1.46
CCDC88AQ3V6T2 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 SNORA70.10-201ENST00000384515 134 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 RPL23AP24-201ENST00000458203 385 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms