Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.24□□□□□ -1.41
SMARCA1P28370 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.24□□□□□ -1.41
SMARCA1P28370 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SMARCA1P28370 AL034549.2-201ENST00000618285 3373 ntBASIC6.24□□□□□ -1.41
SMARCA1P28370 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SMARCA1P28370 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SMARCA1P28370 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SMARCA1P28370 AC008432.1-201ENST00000615912 1320 ntBASIC6.24□□□□□ -1.41
SMARCA1P28370 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 AC003973.3-201ENST00000624863 2822 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.23□□□□□ -1.41
SMARCA1P28370 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 AC005294.1-201ENST00000355509 281 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 RNU6-1005P-201ENST00000384519 107 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 RNU1-77P-201ENST00000390868 162 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 RNU6-298P-201ENST00000390888 96 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 GAPDHP15-201ENST00000398586 975 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.23□□□□□ -1.41
SMARCA1P28370 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC6.23□□□□□ -1.41
SMARCA1P28370 RN7SKP59-201ENST00000410520 314 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC6.23□□□□□ -1.41
SMARCA1P28370 Z68694.1-201ENST00000413929 841 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 PTP4A1P7-201ENST00000423476 514 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 CYCSP6-201ENST00000434498 302 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AL359265.1-201ENST00000440296 795 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AL353898.1-201ENST00000444055 238 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.23□□□□□ -1.41
SMARCA1P28370 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC6.23□□□□□ -1.41
SMARCA1P28370 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.23□□□□□ -1.41
SMARCA1P28370 RPS26P39-201ENST00000469206 341 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC6.23□□□□□ -1.41
SMARCA1P28370 AC133963.2-201ENST00000513686 578 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.23□□□□□ -1.41
SMARCA1P28370 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC6.23□□□□□ -1.41
SMARCA1P28370 IGHVIII-67-4-201ENST00000524281 296 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 NPM1P35-201ENST00000533043 868 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC6.23□□□□□ -1.41
SMARCA1P28370 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.23□□□□□ -1.41
SMARCA1P28370 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 MIR4489-201ENST00000578869 62 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AP000919.1-202ENST00000581139 1264 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AP000769.2-201ENST00000602344 396 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AC002069.2-201ENST00000603580 883 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AC098935.2-201ENST00000604222 466 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AC244107.2-201ENST00000611773 76 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC6.23□□□□□ -1.41
SMARCA1P28370 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 AL353796.1-201ENST00000561542 3241 ntBASIC6.23□□□□□ -1.41
SMARCA1P28370 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
SMARCA1P28370 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SMARCA1P28370 CR788268.1-201ENST00000603931 1809 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.22□□□□□ -1.41
SMARCA1P28370 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SMARCA1P28370 OR55B1P-203ENST00000641518 2602 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SMARCA1P28370 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SMARCA1P28370 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.22□□□□□ -1.41
SMARCA1P28370 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.22□□□□□ -1.41
SMARCA1P28370 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SMARCA1P28370 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SMARCA1P28370 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SMARCA1P28370 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC6.22□□□□□ -1.41
SMARCA1P28370 RNU6-1320P-201ENST00000390838 107 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RNU6-1269P-201ENST00000391139 107 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AL133482.1-201ENST00000415988 498 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.22□□□□□ -1.41
SMARCA1P28370 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.22□□□□□ -1.41
SMARCA1P28370 ELOCP13-201ENST00000443934 329 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 EXOSC3P1-201ENST00000448649 500 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.22□□□□□ -1.41
SMARCA1P28370 DNAJB5P1-201ENST00000454004 806 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC6.22□□□□□ -1.41
SMARCA1P28370 AC079168.1-201ENST00000458741 345 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RNU6-599P-201ENST00000459383 107 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RNU6-1193P-201ENST00000459461 107 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RPS17P11-201ENST00000474297 293 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 SYT14P1-201ENST00000481459 721 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RPS24P16-201ENST00000497294 392 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC008427.1-201ENST00000503102 655 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC010374.1-201ENST00000503762 1237 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 SNORA19.3-201ENST00000516165 130 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 RNA5SP373-201ENST00000517271 95 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC022360.1-201ENST00000521058 340 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SMARCA1P28370 OR8G5-201ENST00000524943 1041 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 OR8G3P-201ENST00000533406 921 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SMARCA1P28370 AP000916.1-201ENST00000533869 835 ntBASIC6.22□□□□□ -1.41
SMARCA1P28370 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms