Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A3P25940 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A3P25940 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A3P25940 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A3P25940 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A3P25940 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A3P25940 SNORA70C-201ENST00000384538 135 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 AL583835.1-201ENST00000399570 407 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A3P25940 HMGB1P23-201ENST00000518743 568 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A3P25940 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A3P25940 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A3P25940 AC093227.2-201ENST00000589357 285 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A3P25940 AL034370.1-201ENST00000397254 1590 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 OR51H2P-202ENST00000641424 3046 ntBASIC5.88□□□□□ -1.47
COL5A3P25940 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL5A3P25940 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A3P25940 ABCC13-202ENST00000463099 3842 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.87□□□□□ -1.47
COL5A3P25940 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A3P25940 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL5A3P25940 AL450345.1-202ENST00000605741 3881 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.87□□□□□ -1.47
COL5A3P25940 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A3P25940 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A3P25940 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A3P25940 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL5A3P25940 RNA5SP366-201ENST00000365454 123 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 RPL32P23-201ENST00000397237 405 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 OR8G2P-201ENST00000412796 908 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 CASKP1-201ENST00000412870 582 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 CYP4F29P-201ENST00000420685 446 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 AC092162.1-201ENST00000432828 434 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 NDUFA5P1-201ENST00000433858 341 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.87□□□□□ -1.47
COL5A3P25940 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.87□□□□□ -1.47
COL5A3P25940 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 AC090142.1-201ENST00000465776 462 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 AC020593.1-201ENST00000507399 299 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.87□□□□□ -1.47
COL5A3P25940 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A3P25940 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A3P25940 ARF4P1-201ENST00000605447 541 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 AC073137.1-201ENST00000605636 634 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 AL352984.2-202ENST00000613699 155 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.87□□□□□ -1.47
COL5A3P25940 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
COL5A3P25940 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A3P25940 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A3P25940 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A3P25940 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A3P25940 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.86□□□□□ -1.47
COL5A3P25940 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
COL5A3P25940 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.86□□□□□ -1.47
COL5A3P25940 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL5A3P25940 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.86□□□□□ -1.47
COL5A3P25940 ATP5F1P2-201ENST00000398143 760 ntBASIC5.86□□□□□ -1.47
COL5A3P25940 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.86□□□□□ -1.47
COL5A3P25940 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.86□□□□□ -1.47
COL5A3P25940 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 RNA5SP143-201ENST00000516936 115 ntBASIC5.86□□□□□ -1.47
COL5A3P25940 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.86□□□□□ -1.47
COL5A3P25940 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.86□□□□□ -1.47
COL5A3P25940 RN7SL703P-201ENST00000578485 302 ntBASIC5.86□□□□□ -1.47
COL5A3P25940 RPL7P50-201ENST00000600588 727 ntBASIC5.86□□□□□ -1.47
COL5A3P25940 BX005214.3-202ENST00000619809 325 ntBASIC5.86□□□□□ -1.47
COL5A3P25940 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
COL5A3P25940 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL5A3P25940 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL5A3P25940 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
COL5A3P25940 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL5A3P25940 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL5A3P25940 AL050305.1-201ENST00000399993 1230 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 AL356095.1-201ENST00000417217 199 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.85□□□□□ -1.47
COL5A3P25940 H2AFZP5-201ENST00000446960 382 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 DHFRP3-201ENST00000455595 559 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.85□□□□□ -1.47
COL5A3P25940 RN7SL810P-201ENST00000493031 276 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 AC011477.5-201ENST00000586571 259 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 AC090948.2-201ENST00000607363 564 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A3P25940 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A3P25940 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL5A3P25940 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms