Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC4.36□□□□□ -1.71
USF1P22415 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC4.36□□□□□ -1.71
USF1P22415 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
USF1P22415 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.36□□□□□ -1.71
USF1P22415 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.36□□□□□ -1.71
USF1P22415 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
USF1P22415 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.36□□□□□ -1.71
USF1P22415 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.36□□□□□ -1.71
USF1P22415 AC087283.1-201ENST00000604029 1074 ntBASIC4.36□□□□□ -1.71
USF1P22415 AC087783.2-201ENST00000605070 562 ntBASIC4.36□□□□□ -1.71
USF1P22415 AC073575.2-201ENST00000614212 627 ntBASIC4.36□□□□□ -1.71
USF1P22415 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.36□□□□□ -1.71
USF1P22415 RNU6-368P-201ENST00000620928 107 ntBASIC4.36□□□□□ -1.71
USF1P22415 RNU6-538P-201ENST00000622329 107 ntBASIC4.36□□□□□ -1.71
USF1P22415 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USF1P22415 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
USF1P22415 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
USF1P22415 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
USF1P22415 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.36□□□□□ -1.71
USF1P22415 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.36□□□□□ -1.71
USF1P22415 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USF1P22415 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
USF1P22415 NXF4-202ENST00000416098 1465 ntBASIC4.36□□□□□ -1.71
USF1P22415 AC107021.2-201ENST00000567714 2095 ntBASIC4.36□□□□□ -1.71
USF1P22415 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
USF1P22415 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USF1P22415 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
USF1P22415 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
USF1P22415 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 RN7SKP153-201ENST00000365026 316 ntBASIC4.35□□□□□ -1.71
USF1P22415 AL353625.1-202ENST00000366273 571 ntBASIC4.35□□□□□ -1.71
USF1P22415 BMS1P3-201ENST00000372011 932 ntBASIC4.35□□□□□ -1.71
USF1P22415 OR1L6-202ENST00000373684 1044 ntBASIC4.35□□□□□ -1.71
USF1P22415 MIR1182-201ENST00000408363 97 ntBASIC4.35□□□□□ -1.71
USF1P22415 RN7SKP97-201ENST00000410966 333 ntBASIC4.35□□□□□ -1.71
USF1P22415 PCNPP4-201ENST00000414817 517 ntBASIC4.35□□□□□ -1.71
USF1P22415 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.35□□□□□ -1.71
USF1P22415 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
USF1P22415 USP9YP9-201ENST00000429406 715 ntBASIC4.35□□□□□ -1.71
USF1P22415 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.35□□□□□ -1.71
USF1P22415 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 AL589765.3-201ENST00000446084 462 ntBASIC4.35□□□□□ -1.71
USF1P22415 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 RPL7P16-201ENST00000479738 738 ntBASIC4.35□□□□□ -1.71
USF1P22415 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 HMGN2P25-201ENST00000486956 268 ntBASIC4.35□□□□□ -1.71
USF1P22415 RPS12P31-201ENST00000491419 398 ntBASIC4.35□□□□□ -1.71
USF1P22415 RN7SL244P-201ENST00000493405 297 ntBASIC4.35□□□□□ -1.71
USF1P22415 RPL37AP8-201ENST00000494116 276 ntBASIC4.35□□□□□ -1.71
USF1P22415 BLNK-209ENST00000495266 440 ntTSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 IGBP1P4-201ENST00000503202 879 ntBASIC4.35□□□□□ -1.71
USF1P22415 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC4.35□□□□□ -1.71
USF1P22415 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.35□□□□□ -1.71
USF1P22415 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.35□□□□□ -1.71
USF1P22415 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.35□□□□□ -1.71
USF1P22415 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 AC115989.2-201ENST00000578640 563 ntBASIC4.35□□□□□ -1.71
USF1P22415 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.35□□□□□ -1.71
USF1P22415 AC244107.2-201ENST00000611773 76 ntBASIC4.35□□□□□ -1.71
USF1P22415 AC026367.3-201ENST00000619032 590 ntBASIC4.35□□□□□ -1.71
USF1P22415 AC112694.2-201ENST00000623697 768 ntBASIC4.35□□□□□ -1.71
USF1P22415 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 AC097461.1-201ENST00000568928 2821 ntBASIC4.35□□□□□ -1.71
USF1P22415 AC003973.3-201ENST00000624863 2822 ntBASIC4.35□□□□□ -1.71
USF1P22415 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
USF1P22415 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.35□□□□□ -1.71
USF1P22415 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.35□□□□□ -1.71
USF1P22415 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.34□□□□□ -1.71
USF1P22415 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.34□□□□□ -1.71
USF1P22415 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.34□□□□□ -1.71
USF1P22415 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
USF1P22415 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USF1P22415 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
USF1P22415 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
USF1P22415 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.34□□□□□ -1.71
USF1P22415 AC010132.2-201ENST00000295493 1043 ntBASIC4.34□□□□□ -1.71
USF1P22415 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USF1P22415 RN7SKP149-201ENST00000363008 344 ntBASIC4.34□□□□□ -1.71
USF1P22415 Z97832.1-201ENST00000402490 328 ntBASIC4.34□□□□□ -1.71
USF1P22415 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USF1P22415 RAB9AP4-201ENST00000415230 609 ntBASIC4.34□□□□□ -1.71
USF1P22415 AL807761.1-201ENST00000417622 171 ntBASIC4.34□□□□□ -1.71
USF1P22415 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.34□□□□□ -1.71
USF1P22415 AC245028.1-201ENST00000423259 256 ntBASIC4.34□□□□□ -1.71
USF1P22415 MTCO1P51-201ENST00000427672 1060 ntBASIC4.34□□□□□ -1.71
USF1P22415 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms