Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.8□□□□□ -1.64
CLDN9O95484 THAP12P4-201ENST00000528321 2266 ntBASIC4.8□□□□□ -1.64
CLDN9O95484 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.8□□□□□ -1.64
CLDN9O95484 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CLDN9O95484 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 SAMMSON-213ENST00000641336 1521 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 Z97832.1-201ENST00000402490 328 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 RNA5SP296-201ENST00000410523 111 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 TMBIM7P-201ENST00000418074 855 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.79□□□□□ -1.64
CLDN9O95484 AL138787.1-202ENST00000437804 898 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 SCAND3P1-201ENST00000439854 1060 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 TSACC-207ENST00000470342 601 ntTSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.79□□□□□ -1.64
CLDN9O95484 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 RN7SL222P-201ENST00000476452 299 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 RPS18P6-201ENST00000476880 458 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 AC023424.1-201ENST00000496058 459 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.79□□□□□ -1.64
CLDN9O95484 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 RNA5SP43-201ENST00000516559 110 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.79□□□□□ -1.64
CLDN9O95484 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.79□□□□□ -1.64
CLDN9O95484 OR11J2P-201ENST00000555298 907 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.79□□□□□ -1.64
CLDN9O95484 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.79□□□□□ -1.64
CLDN9O95484 TVP23CP2-201ENST00000571473 623 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 MIR4472-2-201ENST00000582069 67 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.79□□□□□ -1.64
CLDN9O95484 AP005262.1-201ENST00000582646 997 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 EIF1P5-201ENST00000585002 234 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 SDR42E1P1-201ENST00000611327 477 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 AC019206.1-201ENST00000621938 425 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 AC025574.1-201ENST00000554784 1653 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.79□□□□□ -1.64
CLDN9O95484 C4BPAP1-201ENST00000415474 1893 ntBASIC4.79□□□□□ -1.64
CLDN9O95484 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CLDN9O95484 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 AC104260.2-201ENST00000623551 3497 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 AC053481.2-202ENST00000582394 1500 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.78□□□□□ -1.64
CLDN9O95484 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.78□□□□□ -1.64
CLDN9O95484 NPM1P40-201ENST00000412758 733 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.78□□□□□ -1.64
CLDN9O95484 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC4.78□□□□□ -1.64
CLDN9O95484 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 CNOT7P2-201ENST00000441051 832 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.78□□□□□ -1.64
CLDN9O95484 AC107015.1-201ENST00000466902 747 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 RPL5P22-201ENST00000480199 884 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.78□□□□□ -1.64
CLDN9O95484 HIGD1AP14-201ENST00000507617 282 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 RNU6-513P-201ENST00000516104 104 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 Y_RNA.719-201ENST00000517156 106 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.78□□□□□ -1.64
CLDN9O95484 AC022832.1-201ENST00000530718 645 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.78□□□□□ -1.64
CLDN9O95484 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 AC093591.2-201ENST00000565254 3843 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 CYCSP40-201ENST00000575927 294 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AP000919.1-201ENST00000582850 985 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.78□□□□□ -1.64
CLDN9O95484 AC013244.1-201ENST00000604279 193 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AC005377.1-201ENST00000605126 456 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AL139407.1-201ENST00000613826 1175 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.78□□□□□ -1.64
CLDN9O95484 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 SOCS5P3-201ENST00000425115 1576 ntBASIC4.78□□□□□ -1.64
CLDN9O95484 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.78□□□□□ -1.64
CLDN9O95484 STX3-208ENST00000641815 3236 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms