Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 MRPL48P1-201ENST00000445390 636 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC073850.1-201ENST00000449243 255 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC098583.1-201ENST00000480875 255 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC011411.1-201ENST00000509592 876 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC138938.1-201ENST00000515431 782 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AP000919.1-201ENST00000582850 985 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AP001521.2-201ENST00000608772 546 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 MIR8069-1-201ENST00000616627 86 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 MIR8069-2-201ENST00000621412 86 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 AC015871.5-202ENST00000623252 701 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 CR381572.2-201ENST00000624852 397 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.86□□□□□ -1.63
TREX1Q9NSU2 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.86□□□□□ -1.63
TREX1Q9NSU2 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC099654.2-201ENST00000433031 1980 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 RNA5SP305-201ENST00000362665 119 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 RNU4-4P-201ENST00000364588 130 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 BMS1P3-201ENST00000372011 932 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 RNU6-729P-201ENST00000384399 107 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC092642.1-201ENST00000392417 425 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 E2F6P2-201ENST00000420708 748 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AL645608.4-201ENST00000423619 154 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 NMNAT1P2-201ENST00000435192 860 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC092647.3-201ENST00000443044 633 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AL031584.1-201ENST00000447169 754 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC018552.1-201ENST00000562099 811 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 MIR4675-201ENST00000577898 77 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AL137072.1-201ENST00000603444 466 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC012414.7-202ENST00000622705 1090 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC112694.2-201ENST00000623697 768 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.85□□□□□ -1.63
TREX1Q9NSU2 MUC2-202ENST00000613187 4845 ntBASIC4.85□□□□□ -1.63
TREX1Q9NSU2 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC133552.1-201ENST00000569988 4007 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 HMGB3P7-201ENST00000400214 611 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 ARL4AP5-201ENST00000404372 599 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 SETP15-201ENST00000412724 337 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AL451139.1-201ENST00000434718 346 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 MYO5BP2-201ENST00000449815 1277 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 RN7SL515P-201ENST00000463999 297 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AL591473.1-201ENST00000464297 313 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC004815.1-201ENST00000484185 331 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC068993.1-201ENST00000546724 589 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC087477.6-201ENST00000559595 843 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC093249.4-201ENST00000564755 259 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.84□□□□□ -1.63
TREX1Q9NSU2 AC020910.3-201ENST00000603701 874 ntBASIC4.84□□□□□ -1.63
TREX1Q9NSU2 QTRT1P1-201ENST00000604344 1078 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms