Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC104260.2-201ENST00000623551 3497 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 CTSL3P-202ENST00000412179 788 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 NPM1P40-201ENST00000412758 733 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 DDX39BP1-205ENST00000422507 192 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AL450263.2-201ENST00000439400 589 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 HAUS1P1-201ENST00000505275 832 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 DPRXP4-201ENST00000578053 568 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC135068.12-201ENST00000637370 931 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 AC073136.1-201ENST00000449426 2884 ntBASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
TM9SF3Q9HD45 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 RN7SKP224-201ENST00000364140 325 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 RNA5SP455-201ENST00000365190 119 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 SNORA48.4-201ENST00000391089 134 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 CYB5AP4-201ENST00000396692 399 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 PPIAP9-201ENST00000403866 498 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 MIR1182-201ENST00000408363 97 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 RPL26P29-201ENST00000415623 438 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AL807761.1-201ENST00000417622 171 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 OR6C64P-201ENST00000419708 825 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AL590609.2-201ENST00000421430 368 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 RPL7AP49-201ENST00000429522 581 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC022022.1-201ENST00000430304 178 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AL591438.1-201ENST00000433508 581 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AP000936.3-201ENST00000438127 255 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 CEACAMP9-201ENST00000442990 513 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC079168.1-201ENST00000458741 345 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AP000797.2-201ENST00000475768 606 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 HMGN2P25-201ENST00000486956 268 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AL049874.2-201ENST00000492636 288 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC107918.3-201ENST00000533272 382 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 EDDM3DP-201ENST00000554692 434 ntBASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.18□□□□□ -1.58
TM9SF3Q9HD45 AC087385.3-201ENST00000620477 187 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms