Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC108738.1-201ENST00000603703 237 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC087783.2-201ENST00000605070 562 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 HMGB1P51-201ENST00000605166 638 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 AC135068.12-201ENST00000637370 931 ntBASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC3Q9BQI4 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC003985.2-201ENST00000562268 1669 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 SNORA27.3-201ENST00000364937 134 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 RNA5SP455-201ENST00000365190 119 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 SNORA56-201ENST00000383966 129 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 DDX39BP1-205ENST00000422507 192 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 MTND2P11-201ENST00000423638 648 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 EI24P4-201ENST00000423683 1078 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 RPS4XP16-201ENST00000427198 791 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 RPL31P44-201ENST00000447680 377 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AP000797.2-201ENST00000475768 606 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 RPL37AP8-201ENST00000494116 276 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 RPS24P16-201ENST00000497294 392 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC105233.1-201ENST00000498840 781 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 IGBP1P4-201ENST00000503202 879 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 SNORA26.10-201ENST00000516427 141 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 RN7SKP260-201ENST00000516907 149 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC022360.1-201ENST00000521058 340 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 OR4A43P-201ENST00000532938 908 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC011487.3-201ENST00000593607 453 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 MIMT1-201ENST00000597105 1050 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC009237.13-201ENST00000603193 276 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AC012213.4-201ENST00000606457 354 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AL356490.1-201ENST00000623079 479 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 AL356317.1-201ENST00000396110 1436 ntBASIC5.06□□□□□ -1.6
CCDC3Q9BQI4 OR9K1P-202ENST00000641111 3217 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 RN7SKP145-201ENST00000363291 303 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AL078599.1-201ENST00000402075 293 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 MIR1182-201ENST00000408363 97 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 SETP10-201ENST00000424368 814 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC009784.1-201ENST00000426484 460 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 RPS29P10-201ENST00000439197 166 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC083899.1-201ENST00000454465 3819 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 EIF2S2P4-201ENST00000461070 984 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC092324.1-201ENST00000468671 324 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 RPS29P22-201ENST00000472363 168 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 PCNAP1-201ENST00000505363 709 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms