Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RN7SKP99-201ENST00000517028 307 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 TRIM51GP-201ENST00000534741 1350 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC011626.1-201ENST00000604710 562 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AP004372.1-201ENST00000604842 844 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AL356608.1-201ENST00000610034 820 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
NKX3-1Q99801 MIR6839-201ENST00000620425 113 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC074140.1-201ENST00000621617 208 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AL731532.2-201ENST00000623542 1953 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC092159.4-201ENST00000624944 550 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC079298.1-201ENST00000625026 1619 ntBASIC4.59□□□□□ -1.67
NKX3-1Q99801 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
NKX3-1Q99801 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
NKX3-1Q99801 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.59□□□□□ -1.68
NKX3-1Q99801 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
NKX3-1Q99801 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 TCP1P3-201ENST00000414406 1498 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL136520.1-201ENST00000600311 1322 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 OR9K1P-201ENST00000326513 941 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 SNORA63.3-201ENST00000362682 132 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 RNU6-31P-201ENST00000384388 108 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 RNU6-1263P-201ENST00000384601 106 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 U3.25-201ENST00000391209 220 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL133388.1-201ENST00000404509 287 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC093155.2-201ENST00000420734 937 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL512661.1-201ENST00000434586 1253 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AP000281.1-201ENST00000444036 316 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC016772.1-201ENST00000444170 1261 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 SUMO2P1-206ENST00000445436 284 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC104634.1-201ENST00000452720 462 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 BTG4P1-201ENST00000510421 183 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC098976.1-201ENST00000513014 541 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 HAUS1P3-201ENST00000523909 662 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 ARL6IP1P3-201ENST00000524544 560 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 OSBPL9P3-201ENST00000534523 595 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC106730.2-201ENST00000566641 540 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 RBM22P12-201ENST00000567098 1255 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 RBM22P1-201ENST00000578589 1214 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL589674.2-201ENST00000604304 337 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC104695.2-201ENST00000605056 775 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC109309.2-201ENST00000612597 332 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 RNA5SP440-201ENST00000612665 119 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC245389.2-201ENST00000616023 576 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AC242843.1-201ENST00000618702 573 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL158062.1-201ENST00000619632 745 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 AP003400.3-201ENST00000624904 346 ntBASIC4.58□□□□□ -1.68
NKX3-1Q99801 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
NKX3-1Q99801 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
NKX3-1Q99801 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms