Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HMGN1P6-201ENST00000438508 291 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC112653.1-201ENST00000443851 386 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AL353803.3-201ENST00000444641 335 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 SDHCP3-201ENST00000445371 506 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 ARPC3P5-201ENST00000448802 534 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RPL31P50-201ENST00000471002 296 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC091982.1-202ENST00000473923 343 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 MYL6P4-201ENST00000477911 453 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RPS14P8-201ENST00000478778 369 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC105391.1-201ENST00000503155 1045 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC098799.2-201ENST00000509466 868 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RNU2-46P-201ENST00000517038 113 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 OXR1-212ENST00000521592 993 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 BCAS2P1-201ENST00000528022 632 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 FAM92A1P1-201ENST00000528023 890 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 ZNF705CP-201ENST00000530515 889 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 OR7E161P-201ENST00000533722 967 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC023827.2-201ENST00000566880 1061 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 ANP32BP1-202ENST00000568553 737 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 MIR4504-201ENST00000577413 92 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC024614.1-201ENST00000577546 307 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 MIR3682-201ENST00000581338 84 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC091135.1-201ENST00000585943 307 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC006504.3-201ENST00000586818 523 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC104458.1-201ENST00000608243 463 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AL590282.1-201ENST00000610379 1136 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 CASC19-264ENST00000641912 1184 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 PANDAR-201ENST00000629595 1506 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 XPOTP1-201ENST00000443317 2398 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC133552.3-201ENST00000572236 1869 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC096992.2-201ENST00000609553 1684 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 WBP11P1-201ENST00000562560 1931 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL359922.2-201ENST00000581788 3017 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 ZNF33BP1-201ENST00000452497 1834 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL442128.2-201ENST00000620246 1824 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 OR4K15-201ENST00000305051 1216 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 MIR199B-201ENST00000384849 110 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 OR7E101P-201ENST00000400428 513 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL031679.1-201ENST00000400616 525 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 GRIK1-AS1-202ENST00000412579 818 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 RPS21P8-201ENST00000413365 247 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL773545.3-201ENST00000414297 706 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC134879.1-201ENST00000426062 394 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 RPEP2-201ENST00000432149 701 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL354983.1-201ENST00000434580 906 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC009961.2-201ENST00000435771 251 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms