Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
FOXA1P55317 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
FOXA1P55317 AL590762.2-201ENST00000395798 571 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 HMGB3P7-201ENST00000400214 611 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 OR51B3P-201ENST00000412287 913 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 GLUD1P9-201ENST00000420997 1173 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.59□□□□□ -1.67
FOXA1P55317 AL355433.1-201ENST00000422804 300 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 AC104651.2-201ENST00000447549 528 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 AC010733.1-201ENST00000451515 401 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.59□□□□□ -1.67
FOXA1P55317 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.59□□□□□ -1.67
FOXA1P55317 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.59□□□□□ -1.67
FOXA1P55317 RN7SKP66-201ENST00000516681 231 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.59□□□□□ -1.67
FOXA1P55317 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.59□□□□□ -1.67
FOXA1P55317 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.59□□□□□ -1.67
FOXA1P55317 AC005520.3-201ENST00000602874 370 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 AC097505.1-201ENST00000610199 565 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 AL139407.1-201ENST00000613826 1175 ntBASIC4.59□□□□□ -1.67
FOXA1P55317 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.67
FOXA1P55317 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA1P55317 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA1P55317 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.68
FOXA1P55317 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.59□□□□□ -1.68
FOXA1P55317 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA1P55317 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA1P55317 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
FOXA1P55317 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA1P55317 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
FOXA1P55317 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA1P55317 FGG-205ENST00000407946 1636 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.58□□□□□ -1.68
FOXA1P55317 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
FOXA1P55317 RNU4-4P-201ENST00000364588 130 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA1P55317 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA1P55317 RNU1-82P-201ENST00000390851 165 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 Z68694.1-201ENST00000413929 841 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 OR2AM1P-201ENST00000422137 422 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 Z74021.1-201ENST00000423610 407 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 AC092647.3-201ENST00000443044 633 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA1P55317 AC234781.3-201ENST00000452540 973 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 AC091868.1-201ENST00000508746 304 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 AC013701.1-201ENST00000522657 465 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA1P55317 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXA1P55317 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA1P55317 AC133555.2-201ENST00000550213 292 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA1P55317 AP001521.2-201ENST00000608772 546 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 CR381572.2-201ENST00000624852 397 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA1P55317 AC026523.2-201ENST00000625039 7739 ntBASIC4.58□□□□□ -1.68
FOXA1P55317 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA1P55317 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
FOXA1P55317 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXA1P55317 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXA1P55317 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA1P55317 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA1P55317 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA1P55317 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA1P55317 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
FOXA1P55317 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.57□□□□□ -1.68
FOXA1P55317 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXA1P55317 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA1P55317 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA1P55317 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXA1P55317 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXA1P55317 RN7SKP97-201ENST00000410966 333 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 CHEK2P3-201ENST00000416118 248 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA1P55317 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA1P55317 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.57□□□□□ -1.68
FOXA1P55317 OR2B7P-201ENST00000429302 934 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA1P55317 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA1P55317 PRPF38AP2-201ENST00000438179 851 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA1P55317 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXA1P55317 AL161722.1-201ENST00000446972 1032 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 DEFB109F-201ENST00000491870 277 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms