Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 AC010894.1-201ENST00000313760 361 ntBASIC6.75□□□□□ -1.33
LIG3P49916 SNORA70.3-201ENST00000365075 132 ntBASIC6.75□□□□□ -1.33
LIG3P49916 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 SNORD94-201ENST00000386037 137 ntBASIC6.75□□□□□ -1.33
LIG3P49916 RNU11-201ENST00000387069 134 ntBASIC6.75□□□□□ -1.33
LIG3P49916 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC136624.1-201ENST00000400791 413 ntBASIC6.75□□□□□ -1.33
LIG3P49916 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 RPL23AP39-201ENST00000415533 405 ntBASIC6.75□□□□□ -1.33
LIG3P49916 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 RPL30P16-201ENST00000419341 429 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC6.75□□□□□ -1.33
LIG3P49916 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.75□□□□□ -1.33
LIG3P49916 ARL6IP1P2-201ENST00000431356 563 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AL139156.3-201ENST00000454802 394 ntBASIC6.75□□□□□ -1.33
LIG3P49916 snoU13.29-201ENST00000459370 104 ntBASIC6.75□□□□□ -1.33
LIG3P49916 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
LIG3P49916 RPL7AP23-201ENST00000482625 776 ntBASIC6.75□□□□□ -1.33
LIG3P49916 RPS7P6-201ENST00000485777 579 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AC114324.2-202ENST00000503812 134 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC006499.5-201ENST00000505037 514 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AC016957.1-201ENST00000534895 309 ntBASIC6.75□□□□□ -1.33
LIG3P49916 RPL3P13-201ENST00000550415 216 ntBASIC6.75□□□□□ -1.33
LIG3P49916 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
LIG3P49916 GTF2IP8-201ENST00000560687 584 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.75□□□□□ -1.33
LIG3P49916 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.75□□□□□ -1.33
LIG3P49916 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 MTND1P15-201ENST00000579262 949 ntBASIC6.75□□□□□ -1.33
LIG3P49916 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AP002884.5-201ENST00000595053 1132 ntBASIC6.75□□□□□ -1.33
LIG3P49916 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 AL360012.1-201ENST00000602813 131 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC068276.1-201ENST00000605793 379 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.75□□□□□ -1.33
LIG3P49916 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 AL445670.1-201ENST00000618889 801 ntBASIC6.75□□□□□ -1.33
LIG3P49916 AC048341.3-201ENST00000619323 491 ntBASIC6.75□□□□□ -1.33
LIG3P49916 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
LIG3P49916 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.75□□□□□ -1.33
LIG3P49916 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
LIG3P49916 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
LIG3P49916 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.75□□□□□ -1.33
LIG3P49916 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 CASC19-260ENST00000641828 2001 ntBASIC6.74□□□□□ -1.33
LIG3P49916 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
LIG3P49916 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.74□□□□□ -1.33
LIG3P49916 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
LIG3P49916 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 Y_RNA.41-201ENST00000362646 102 ntBASIC6.74□□□□□ -1.33
LIG3P49916 RNU1-55P-201ENST00000365510 158 ntBASIC6.74□□□□□ -1.33
LIG3P49916 RNY3P10-201ENST00000384764 102 ntBASIC6.74□□□□□ -1.33
LIG3P49916 NACAP7-201ENST00000407371 609 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC017078.1-201ENST00000416146 368 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AL663061.1-201ENST00000416625 580 ntBASIC6.74□□□□□ -1.33
LIG3P49916 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.74□□□□□ -1.33
LIG3P49916 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.74□□□□□ -1.33
LIG3P49916 AL009174.1-201ENST00000426577 416 ntBASIC6.74□□□□□ -1.33
LIG3P49916 BLOC1S2P1-201ENST00000428431 301 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC239367.3-201ENST00000428996 814 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.74□□□□□ -1.33
LIG3P49916 NEK4P1-201ENST00000433383 879 ntBASIC6.74□□□□□ -1.33
LIG3P49916 RPS25P9-201ENST00000435591 252 ntBASIC6.74□□□□□ -1.33
LIG3P49916 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.74□□□□□ -1.33
LIG3P49916 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 RPL23AP35-201ENST00000451906 501 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
LIG3P49916 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC6.74□□□□□ -1.33
LIG3P49916 AKR1D1P1-201ENST00000457236 936 ntBASIC6.74□□□□□ -1.33
LIG3P49916 SULT1D1P-201ENST00000458020 882 ntBASIC6.74□□□□□ -1.33
LIG3P49916 RPL7P48-201ENST00000461513 746 ntBASIC6.74□□□□□ -1.33
LIG3P49916 SNRPCP3-201ENST00000474888 476 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC099340.1-201ENST00000475247 599 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC6.74□□□□□ -1.33
LIG3P49916 NACAP5-201ENST00000509863 636 ntBASIC6.74□□□□□ -1.33
LIG3P49916 AC093281.2-201ENST00000510153 597 ntBASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms