Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC5.08□□□□□ -1.6
HTTP42858 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
HTTP42858 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HTTP42858 RN7SKP159-201ENST00000410657 292 ntBASIC5.08□□□□□ -1.6
HTTP42858 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.08□□□□□ -1.6
HTTP42858 AC007688.1-201ENST00000475592 759 ntBASIC5.08□□□□□ -1.6
HTTP42858 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.08□□□□□ -1.6
HTTP42858 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.08□□□□□ -1.6
HTTP42858 AC015908.5-201ENST00000623289 343 ntBASIC5.08□□□□□ -1.6
HTTP42858 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC5.08□□□□□ -1.6
HTTP42858 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.08□□□□□ -1.6
HTTP42858 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
HTTP42858 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HTTP42858 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HTTP42858 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
HTTP42858 MRPL50P1-201ENST00000431951 384 ntBASIC5.08□□□□□ -1.6
HTTP42858 RPS29P7-201ENST00000439662 171 ntBASIC5.08□□□□□ -1.6
HTTP42858 AC104763.1-201ENST00000475274 360 ntBASIC5.08□□□□□ -1.6
HTTP42858 RNU1-103P-201ENST00000516502 125 ntBASIC5.08□□□□□ -1.6
HTTP42858 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.08□□□□□ -1.6
HTTP42858 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.08□□□□□ -1.6
HTTP42858 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.08□□□□□ -1.6
HTTP42858 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
HTTP42858 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HTTP42858 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HTTP42858 AC092162.3-201ENST00000624511 1624 ntBASIC5.07□□□□□ -1.6
HTTP42858 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.07□□□□□ -1.6
HTTP42858 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
HTTP42858 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HTTP42858 COX6CP13-201ENST00000428703 226 ntBASIC5.07□□□□□ -1.6
HTTP42858 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.07□□□□□ -1.6
HTTP42858 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.07□□□□□ -1.6
HTTP42858 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.07□□□□□ -1.6
HTTP42858 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.07□□□□□ -1.6
HTTP42858 AC009093.8-201ENST00000641769 292 ntBASIC5.07□□□□□ -1.6
HTTP42858 METTL2B-204ENST00000480046 5743 ntTSL 2 BASIC5.07□□□□□ -1.6
HTTP42858 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HTTP42858 AL391684.1-202ENST00000641293 1636 ntBASIC5.07□□□□□ -1.6
HTTP42858 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HTTP42858 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.07□□□□□ -1.6
HTTP42858 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HTTP42858 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.07□□□□□ -1.6
HTTP42858 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC5.07□□□□□ -1.6
HTTP42858 AC008033.1-201ENST00000216407 1162 ntBASIC5.07□□□□□ -1.6
HTTP42858 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.07□□□□□ -1.6
HTTP42858 RPL12P9-201ENST00000412942 488 ntBASIC5.07□□□□□ -1.6
HTTP42858 AC024451.1-201ENST00000508013 779 ntBASIC5.07□□□□□ -1.6
HTTP42858 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HTTP42858 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.07□□□□□ -1.6
HTTP42858 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HTTP42858 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 PRICKLE2-205ENST00000638394 9956 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.06□□□□□ -1.6
HTTP42858 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.06□□□□□ -1.6
HTTP42858 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 PDSS1P1-201ENST00000422953 1114 ntBASIC5.06□□□□□ -1.6
HTTP42858 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.06□□□□□ -1.6
HTTP42858 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 ARAFP2-201ENST00000440565 559 ntBASIC5.06□□□□□ -1.6
HTTP42858 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.06□□□□□ -1.6
HTTP42858 OR7E10P-201ENST00000526420 991 ntBASIC5.06□□□□□ -1.6
HTTP42858 AP001804.2-201ENST00000533932 910 ntBASIC5.06□□□□□ -1.6
HTTP42858 AC093014.1-201ENST00000548926 724 ntBASIC5.06□□□□□ -1.6
HTTP42858 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.06□□□□□ -1.6
HTTP42858 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.06□□□□□ -1.6
HTTP42858 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.06□□□□□ -1.6
HTTP42858 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.06□□□□□ -1.6
HTTP42858 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.06□□□□□ -1.6
HTTP42858 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.06□□□□□ -1.6
HTTP42858 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.06□□□□□ -1.6
HTTP42858 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 IPO5P1-202ENST00000600039 287 ntBASIC5.06□□□□□ -1.6
HTTP42858 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.06□□□□□ -1.6
HTTP42858 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 AC084757.4-201ENST00000616350 526 ntBASIC5.06□□□□□ -1.6
HTTP42858 AC000095.2-202ENST00000637415 154 ntBASIC5.06□□□□□ -1.6
HTTP42858 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HTTP42858 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.06□□□□□ -1.6
HTTP42858 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms