Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RNA5SP28-201ENST00000363841 119 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 SNORA70.4-201ENST00000365509 134 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 NRBF2P2-201ENST00000413087 861 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC007738.1-201ENST00000413892 348 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 TBCAP2-201ENST00000416175 326 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL592293.2-201ENST00000422292 996 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC006946.1-201ENST00000429106 328 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 RPL12P28-201ENST00000430852 489 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL136455.1-201ENST00000441083 1240 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 SNORA84-201ENST00000459229 133 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC093815.1-201ENST00000508637 280 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.69□□□□□ -1.66
COL5A1P20908 BUD31P1-201ENST00000521828 359 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.69□□□□□ -1.66
COL5A1P20908 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 NDUFB4P11-201ENST00000560510 395 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 MIR4660-201ENST00000583549 74 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 RPL12P25-202ENST00000598100 674 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL133338.2-201ENST00000604292 736 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL356218.2-201ENST00000605264 187 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 BX005214.3-202ENST00000619809 325 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 OR8B1P-202ENST00000641132 1178 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC4.69□□□□□ -1.66
COL5A1P20908 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
COL5A1P20908 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
COL5A1P20908 CCT8P1-201ENST00000413611 1657 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 RNA5SP171-201ENST00000391071 115 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.69□□□□□ -1.66
COL5A1P20908 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 AL645608.4-201ENST00000423619 154 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL158073.1-201ENST00000426848 1104 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 SCAND3P1-201ENST00000439854 1060 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 ABCC13-202ENST00000463099 3842 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC021660.1-201ENST00000465006 554 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC011276.1-201ENST00000469688 323 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 CR383656.1-201ENST00000484916 377 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC025164.1-201ENST00000496249 478 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.69□□□□□ -1.66
COL5A1P20908 AC093840.1-201ENST00000511599 336 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 AC018695.5-201ENST00000605872 315 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 AC007497.1-201ENST00000610421 561 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 FAM27B-201ENST00000610601 213 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A1P20908 AC087821.1-201ENST00000623639 567 ntBASIC4.69□□□□□ -1.66
COL5A1P20908 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.69□□□□□ -1.66
COL5A1P20908 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
COL5A1P20908 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL5A1P20908 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
COL5A1P20908 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A1P20908 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
COL5A1P20908 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
COL5A1P20908 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
COL5A1P20908 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A1P20908 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL5A1P20908 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.68□□□□□ -1.66
COL5A1P20908 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
COL5A1P20908 IGKV7-3-201ENST00000357453 298 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A1P20908 LRRC37BP1-201ENST00000398851 714 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.68□□□□□ -1.66
COL5A1P20908 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.68□□□□□ -1.66
COL5A1P20908 GLUD1P9-201ENST00000420997 1173 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 COX6CP13-201ENST00000428703 226 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.68□□□□□ -1.66
COL5A1P20908 MYL12BP2-201ENST00000503948 512 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 AC020593.1-201ENST00000507399 299 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 RNU1-6P-201ENST00000516290 144 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A1P20908 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A1P20908 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A1P20908 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A1P20908 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A1P20908 AC115286.1-201ENST00000604298 434 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A1P20908 AC108359.1-201ENST00000616451 1211 ntBASIC4.68□□□□□ -1.66
COL5A1P20908 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.68□□□□□ -1.66
COL5A1P20908 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A1P20908 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A1P20908 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A1P20908 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A1P20908 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms