Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 U3.36-201ENST00000408418 213 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.69□□□□□ -1.66
SDC1P18827 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 OR6C64P-201ENST00000419708 825 ntBASIC4.69□□□□□ -1.66
SDC1P18827 RGS17P1-201ENST00000423358 553 ntBASIC4.69□□□□□ -1.66
SDC1P18827 EIF4HP2-201ENST00000424380 563 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 AL389925.1-201ENST00000432257 728 ntBASIC4.69□□□□□ -1.66
SDC1P18827 FTLP19-201ENST00000433300 394 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AL392003.1-201ENST00000434394 243 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 SNRPFP2-201ENST00000440710 251 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AC000111.2-201ENST00000448200 210 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 TPT1P1-201ENST00000458495 518 ntBASIC4.69□□□□□ -1.66
SDC1P18827 RN7SL172P-201ENST00000460535 303 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AC105918.1-201ENST00000474399 838 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.69□□□□□ -1.66
SDC1P18827 AC020890.1-201ENST00000491837 504 ntBASIC4.69□□□□□ -1.66
SDC1P18827 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 SNRPCP2-201ENST00000504370 475 ntBASIC4.69□□□□□ -1.66
SDC1P18827 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.69□□□□□ -1.66
SDC1P18827 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 BMPR1APS2-201ENST00000527904 1012 ntBASIC4.69□□□□□ -1.66
SDC1P18827 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.69□□□□□ -1.66
SDC1P18827 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.69□□□□□ -1.66
SDC1P18827 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 AC016911.1-201ENST00000613297 452 ntBASIC4.69□□□□□ -1.66
SDC1P18827 MIR8069-1-201ENST00000616627 86 ntBASIC4.69□□□□□ -1.66
SDC1P18827 MIR8069-2-201ENST00000621412 86 ntBASIC4.69□□□□□ -1.66
SDC1P18827 AC019206.1-201ENST00000621938 425 ntBASIC4.69□□□□□ -1.66
SDC1P18827 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC4.69□□□□□ -1.66
SDC1P18827 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SDC1P18827 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDC1P18827 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 CASC19-206ENST00000641028 1430 ntBASIC4.69□□□□□ -1.66
SDC1P18827 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDC1P18827 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SDC1P18827 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SDC1P18827 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDC1P18827 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.69□□□□□ -1.66
SDC1P18827 DDX18P5-201ENST00000534547 1306 ntBASIC4.69□□□□□ -1.66
SDC1P18827 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.69□□□□□ -1.66
SDC1P18827 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
SDC1P18827 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SDC1P18827 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 SALL4P2-201ENST00000423288 2910 ntBASIC4.68□□□□□ -1.66
SDC1P18827 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.68□□□□□ -1.66
SDC1P18827 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SDC1P18827 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SDC1P18827 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SDC1P18827 UBBP2-201ENST00000376781 231 ntBASIC4.68□□□□□ -1.66
SDC1P18827 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SDC1P18827 AL357515.1-201ENST00000402967 542 ntBASIC4.68□□□□□ -1.66
SDC1P18827 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.68□□□□□ -1.66
SDC1P18827 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.68□□□□□ -1.66
SDC1P18827 RN7SKP97-201ENST00000410966 333 ntBASIC4.68□□□□□ -1.66
SDC1P18827 ARAFP1-201ENST00000422172 605 ntBASIC4.68□□□□□ -1.66
SDC1P18827 RPL34P6-201ENST00000432390 345 ntBASIC4.68□□□□□ -1.66
SDC1P18827 AL031584.1-201ENST00000447169 754 ntBASIC4.68□□□□□ -1.66
SDC1P18827 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.68□□□□□ -1.66
SDC1P18827 AL591473.1-201ENST00000464297 313 ntBASIC4.68□□□□□ -1.66
SDC1P18827 AC079841.1-201ENST00000481228 950 ntBASIC4.68□□□□□ -1.66
SDC1P18827 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.68□□□□□ -1.66
SDC1P18827 AC138938.1-201ENST00000515431 782 ntBASIC4.68□□□□□ -1.66
SDC1P18827 Y_RNA.719-201ENST00000517156 106 ntBASIC4.68□□□□□ -1.66
SDC1P18827 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.68□□□□□ -1.66
SDC1P18827 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.68□□□□□ -1.66
SDC1P18827 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.68□□□□□ -1.66
SDC1P18827 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
SDC1P18827 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.68□□□□□ -1.66
SDC1P18827 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.68□□□□□ -1.66
SDC1P18827 AC009268.1-201ENST00000561352 1203 ntBASIC4.68□□□□□ -1.66
SDC1P18827 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
SDC1P18827 AC020915.5-201ENST00000596836 964 ntBASIC4.68□□□□□ -1.66
SDC1P18827 TAS2R6P-201ENST00000605022 826 ntBASIC4.68□□□□□ -1.66
SDC1P18827 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.68□□□□□ -1.66
SDC1P18827 AL159169.2-201ENST00000610061 1269 ntBASIC4.68□□□□□ -1.66
SDC1P18827 AL139407.1-201ENST00000613826 1175 ntBASIC4.68□□□□□ -1.66
SDC1P18827 AL590410.1-201ENST00000617925 333 ntBASIC4.68□□□□□ -1.66
SDC1P18827 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SDC1P18827 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 AL034370.1-201ENST00000397254 1590 ntBASIC4.68□□□□□ -1.66
SDC1P18827 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.68□□□□□ -1.66
SDC1P18827 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.68□□□□□ -1.66
SDC1P18827 FGG-205ENST00000407946 1636 ntTSL 5 BASIC4.68□□□□□ -1.66
SDC1P18827 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDC1P18827 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms