Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
CHMP4AQ9BY43 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CHMP4AQ9BY43 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.99□□□□□ -1.29
CHMP4AQ9BY43 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
CHMP4AQ9BY43 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC007390.2-201ENST00000606229 3803 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC079097.1-201ENST00000512187 1399 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 Z86062.1-201ENST00000406773 777 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 FAM96AP1-201ENST00000430879 482 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 MTCO1P52-201ENST00000433928 531 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 GSTM5P1-201ENST00000434751 660 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC073465.2-201ENST00000440938 498 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AL357520.1-201ENST00000441557 453 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 COPS8P2-201ENST00000473228 627 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 NIP7P2-201ENST00000485801 544 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 RN7SL214P-201ENST00000487317 265 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC024558.1-201ENST00000505008 528 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC021106.1-201ENST00000509020 1058 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC109464.1-201ENST00000511091 819 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC111000.6-201ENST00000514471 709 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 CDC42P3-201ENST00000518493 633 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC126177.5-201ENST00000549599 178 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 RN7SL356P-201ENST00000582228 248 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 MIR548Y-201ENST00000582739 110 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AP001357.1-201ENST00000586304 1053 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AL360270.2-201ENST00000562952 5985 ntBASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.98□□□□□ -1.29
CHMP4AQ9BY43 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AL022322.2-201ENST00000624072 20397 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 SNORA62.2-201ENST00000364672 152 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 SNORA67-201ENST00000384423 137 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 SNORD56.6-201ENST00000384569 71 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 MIR223-201ENST00000385204 110 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 RNA5SP339-201ENST00000390987 122 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 GABARAPL3-201ENST00000412799 354 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 RPL7L1P9-201ENST00000431298 745 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 CYCSP6-201ENST00000434498 302 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 RPL7P48-201ENST00000461513 746 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 RN7SL629P-201ENST00000489622 285 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 RPS24P16-201ENST00000497294 392 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC010285.3-201ENST00000511668 676 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC022360.1-201ENST00000521058 340 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 RARSP1-201ENST00000542842 1418 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 MIR7853-201ENST00000584820 132 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AC012467.1-201ENST00000607740 256 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 BMS1P21-201ENST00000634565 365 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 CASC19-260ENST00000641828 2001 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AL049555.1-201ENST00000562834 1933 ntBASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
CHMP4AQ9BY43 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
CHMP4AQ9BY43 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
CHMP4AQ9BY43 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.96□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms