Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL28A1Q2UY09 HSPA8P14-201ENST00000552265 1805 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC011493.1-201ENST00000596753 1632 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 TCP1P3-201ENST00000414406 1498 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL359715.4-201ENST00000606629 1436 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 RNU1-32P-201ENST00000363937 159 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 RNU4-4P-201ENST00000364588 130 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 RNU6-729P-201ENST00000384399 107 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL035405.1-201ENST00000400795 710 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC006065.1-201ENST00000422539 802 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL512637.2-201ENST00000431287 1256 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC099670.2-201ENST00000435130 321 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC093716.1-201ENST00000435923 377 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC092647.3-201ENST00000443044 633 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 MOB1AP2-201ENST00000446060 614 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL389915.2-201ENST00000454576 441 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL157777.1-201ENST00000468100 304 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC020779.1-201ENST00000478757 796 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 RPS3AP15-201ENST00000483874 781 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 RN7SKP99-201ENST00000517028 307 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC087888.1-201ENST00000550884 1254 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 CBX3P2-202ENST00000583365 535 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC006116.7-201ENST00000590141 756 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC006363.1-201ENST00000603806 463 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AC018645.2-201ENST00000609151 472 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 FRG1DP-201ENST00000635586 771 ntBASIC5.34□□□□□ -1.55
COL28A1Q2UY09 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
COL28A1Q2UY09 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 AC079298.1-201ENST00000625026 1619 ntBASIC5.34□□□□□ -1.56
COL28A1Q2UY09 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.34□□□□□ -1.56
COL28A1Q2UY09 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC239868.2-201ENST00000564237 4527 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 MT-TP-201ENST00000387461 68 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 ATP5F1P6-201ENST00000402768 767 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC092570.3-201ENST00000420113 693 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 RPL17P36-201ENST00000420302 549 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC013410.2-201ENST00000422627 201 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 PTP4A1P3-201ENST00000433661 420 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 MTND2P40-201ENST00000436718 841 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 RPEP1-201ENST00000504507 658 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 IGBP1P5-201ENST00000507524 1000 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC108120.2-201ENST00000512973 294 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC111000.6-201ENST00000514471 709 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 snoU109.5-201ENST00000516231 132 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC134698.5-201ENST00000519444 336 ntBASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.33□□□□□ -1.56
COL28A1Q2UY09 AC013701.1-201ENST00000522657 465 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 164.8 ms