Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC2.88□□□□□ -1.95
HSPG2P98160 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 AC091564.1-201ENST00000464563 479 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 ENPP7P11-201ENST00000505915 627 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC2.88□□□□□ -1.95
HSPG2P98160 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC2.88□□□□□ -1.95
HSPG2P98160 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC2.88□□□□□ -1.95
HSPG2P98160 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 RLIMP1-201ENST00000339626 1680 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 AL031595.3-201ENST00000624919 14262 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC2.88□□□□□ -1.95
HSPG2P98160 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 AC097374.1-203ENST00000400783 485 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC2.88□□□□□ -1.95
HSPG2P98160 GOT2P5-201ENST00000433995 546 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 AC026403.1-201ENST00000518938 295 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC2.88□□□□□ -1.95
HSPG2P98160 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC2.88□□□□□ -1.95
HSPG2P98160 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC2.88□□□□□ -1.95
HSPG2P98160 AC053481.4-201ENST00000583164 216 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
HSPG2P98160 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 NDUFA5P1-201ENST00000433858 341 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC2.88□□□□□ -1.95
HSPG2P98160 RNU6-709P-201ENST00000517257 104 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC2.88□□□□□ -1.95
HSPG2P98160 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC2.88□□□□□ -1.95
HSPG2P98160 RNU4-89P-201ENST00000607443 133 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 AL590004.4-201ENST00000566733 7060 ntBASIC2.88□□□□□ -1.95
HSPG2P98160 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC2.88□□□□□ -1.95
HSPG2P98160 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HSPG2P98160 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
HSPG2P98160 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 RNU6ATAC-201ENST00000408749 126 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 LARP1BP1-201ENST00000506036 1359 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
HSPG2P98160 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
HSPG2P98160 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HSPG2P98160 NANOGP10-201ENST00000453325 895 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 AC084824.2-201ENST00000548906 345 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC2.87□□□□□ -1.95
HSPG2P98160 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC2.87□□□□□ -1.95
HSPG2P98160 MIR4286-201ENST00000580651 93 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 AL034408.1-201ENST00000637712 664 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 OR6C71P-202ENST00000641886 1107 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms