Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
LIM2P55344 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 RNU4-23P-201ENST00000362839 140 ntBASIC4.7□□□□□ -1.66
LIM2P55344 SNORA73.1-201ENST00000363107 205 ntBASIC4.7□□□□□ -1.66
LIM2P55344 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 NPM1P40-201ENST00000412758 733 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AF186996.5-201ENST00000418098 904 ntBASIC4.7□□□□□ -1.66
LIM2P55344 RBMY2QP-201ENST00000429799 1147 ntBASIC4.7□□□□□ -1.66
LIM2P55344 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 AL392003.1-201ENST00000434394 243 ntBASIC4.7□□□□□ -1.66
LIM2P55344 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 PTMAP6-201ENST00000439110 327 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AL161722.1-201ENST00000446972 1032 ntBASIC4.7□□□□□ -1.66
LIM2P55344 MTND6P5-201ENST00000448266 512 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.7□□□□□ -1.66
LIM2P55344 AL356390.1-201ENST00000455684 397 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC093166.2-201ENST00000455969 1017 ntBASIC4.7□□□□□ -1.66
LIM2P55344 RNU6-775P-201ENST00000459318 96 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.7□□□□□ -1.66
LIM2P55344 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.7□□□□□ -1.66
LIM2P55344 AC004453.1-201ENST00000487895 408 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC073073.1-201ENST00000493920 463 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC140172.1-201ENST00000502928 141 ntBASIC4.7□□□□□ -1.66
LIM2P55344 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.7□□□□□ -1.66
LIM2P55344 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 AC044860.2-201ENST00000561005 179 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.7□□□□□ -1.66
LIM2P55344 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.7□□□□□ -1.66
LIM2P55344 AC117490.2-201ENST00000610042 594 ntBASIC4.7□□□□□ -1.66
LIM2P55344 Z95327.3-201ENST00000610385 572 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC068870.2-201ENST00000620635 389 ntBASIC4.7□□□□□ -1.66
LIM2P55344 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 Z95331.1-201ENST00000623075 23112 ntBASIC4.7□□□□□ -1.66
LIM2P55344 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.7□□□□□ -1.66
LIM2P55344 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.7□□□□□ -1.66
LIM2P55344 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
LIM2P55344 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIM2P55344 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
LIM2P55344 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.69□□□□□ -1.66
LIM2P55344 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.69□□□□□ -1.66
LIM2P55344 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
LIM2P55344 AC068446.1-201ENST00000556425 1549 ntBASIC4.69□□□□□ -1.66
LIM2P55344 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LIM2P55344 RNU6-697P-201ENST00000363348 107 ntBASIC4.69□□□□□ -1.66
LIM2P55344 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LIM2P55344 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LIM2P55344 AL645927.1-201ENST00000396783 406 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AL021331.1-201ENST00000402817 582 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AP002530.1-201ENST00000405705 684 ntBASIC4.69□□□□□ -1.66
LIM2P55344 QRSL1P2-201ENST00000418582 964 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.69□□□□□ -1.66
LIM2P55344 OR2AH1P-201ENST00000425717 928 ntBASIC4.69□□□□□ -1.66
LIM2P55344 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.69□□□□□ -1.66
LIM2P55344 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.69□□□□□ -1.66
LIM2P55344 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.69□□□□□ -1.66
LIM2P55344 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.69□□□□□ -1.66
LIM2P55344 AGGF1P3-201ENST00000493675 1213 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AC110775.1-201ENST00000513721 462 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AC117525.1-201ENST00000515228 503 ntBASIC4.69□□□□□ -1.66
LIM2P55344 RNU6-551P-201ENST00000516661 103 ntBASIC4.69□□□□□ -1.66
LIM2P55344 RPL23AP53-201ENST00000521854 457 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.69□□□□□ -1.66
LIM2P55344 LDHC-203ENST00000535809 757 ntTSL 5 BASIC4.69□□□□□ -1.66
LIM2P55344 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.69□□□□□ -1.66
LIM2P55344 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.69□□□□□ -1.66
LIM2P55344 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.69□□□□□ -1.66
LIM2P55344 TVP23CP2-201ENST00000571473 623 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.69□□□□□ -1.66
LIM2P55344 AC211433.2-201ENST00000608433 387 ntBASIC4.69□□□□□ -1.66
LIM2P55344 MIR7155-201ENST00000615925 56 ntBASIC4.69□□□□□ -1.66
LIM2P55344 AL049794.2-201ENST00000616301 365 ntBASIC4.69□□□□□ -1.66
LIM2P55344 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.69□□□□□ -1.66
LIM2P55344 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.69□□□□□ -1.66
LIM2P55344 STX3-208ENST00000641815 3236 ntBASIC4.69□□□□□ -1.66
LIM2P55344 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.69□□□□□ -1.66
LIM2P55344 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIM2P55344 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
LIM2P55344 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.69□□□□□ -1.66
LIM2P55344 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIM2P55344 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.68□□□□□ -1.66
LIM2P55344 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIM2P55344 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
LIM2P55344 AL442128.2-201ENST00000620246 1824 ntBASIC4.68□□□□□ -1.66
LIM2P55344 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIM2P55344 RN7SKP95-201ENST00000362860 303 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms