Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
FOXA1P55317 Z97832.1-201ENST00000402490 328 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AP000534.2-201ENST00000412729 568 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXA1P55317 LINC00993-201ENST00000420453 540 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.62□□□□□ -1.67
FOXA1P55317 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXA1P55317 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 Z80107.2-201ENST00000445127 392 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 AC022832.1-201ENST00000530718 645 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AC020910.3-201ENST00000603701 874 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AC234782.5-201ENST00000617723 324 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AL353684.1-201ENST00000622677 1120 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AC005086.4-201ENST00000623065 213 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 AL359757.1-201ENST00000623176 255 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.62□□□□□ -1.67
FOXA1P55317 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.62□□□□□ -1.67
FOXA1P55317 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXA1P55317 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
FOXA1P55317 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA1P55317 AC008079.2-201ENST00000623543 20396 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXA1P55317 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXA1P55317 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXA1P55317 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
FOXA1P55317 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 RN7SKP95-201ENST00000362860 303 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
FOXA1P55317 U3.30-201ENST00000391308 210 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXA1P55317 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXA1P55317 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXA1P55317 AC005532.2-201ENST00000467154 373 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXA1P55317 AC140172.1-201ENST00000502928 141 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 RNU6ATAC39P-201ENST00000516309 149 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 RN7SKP147-201ENST00000517154 244 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXA1P55317 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXA1P55317 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.61□□□□□ -1.67
FOXA1P55317 GCSHP4-201ENST00000538792 439 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 AC007225.2-201ENST00000562529 256 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 AC015912.2-201ENST00000571053 181 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 RN7SL802P-201ENST00000577858 299 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 MIR5699-201ENST00000578903 90 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 SETP3-201ENST00000581726 813 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 AC209154.1-201ENST00000582156 337 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXA1P55317 MIR6768-201ENST00000610734 72 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXA1P55317 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXA1P55317 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXA1P55317 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXA1P55317 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXA1P55317 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
FOXA1P55317 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.61□□□□□ -1.67
FOXA1P55317 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
FOXA1P55317 AC019072.1-201ENST00000604535 1551 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 CDY3P-201ENST00000454543 1618 ntBASIC4.61□□□□□ -1.67
FOXA1P55317 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.61□□□□□ -1.67
FOXA1P55317 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
FOXA1P55317 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
FOXA1P55317 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXA1P55317 AL121950.1-201ENST00000624993 2077 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
FOXA1P55317 AP002530.1-201ENST00000405705 684 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 EEF1B2P5-201ENST00000444820 548 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC4.6□□□□□ -1.67
FOXA1P55317 RPS4XP12-201ENST00000461747 709 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 RN7SL727P-201ENST00000482164 296 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.6□□□□□ -1.67
FOXA1P55317 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.6□□□□□ -1.67
FOXA1P55317 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.6□□□□□ -1.67
FOXA1P55317 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.6□□□□□ -1.67
FOXA1P55317 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.6□□□□□ -1.67
FOXA1P55317 AC022726.1-201ENST00000587475 207 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.6□□□□□ -1.67
FOXA1P55317 COX6CP4-201ENST00000605798 228 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 SNORD91B-202ENST00000608459 222 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXA1P55317 AC099654.11-201ENST00000638857 294 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 AC108751.5-201ENST00000492880 1336 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
FOXA1P55317 AL590763.1-201ENST00000398297 1545 ntBASIC4.6□□□□□ -1.67
FOXA1P55317 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
FOXA1P55317 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
FOXA1P55317 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.6□□□□□ -1.67
FOXA1P55317 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
FOXA1P55317 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.6□□□□□ -1.67
FOXA1P55317 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms