Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 AL357140.4-201ENST00000636827 412 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA1P49639 OR6C71P-202ENST00000641886 1107 ntBASIC4.61□□□□□ -1.67
HOXA1P49639 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
HOXA1P49639 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
HOXA1P49639 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA1P49639 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA1P49639 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 MTND5P11-201ENST00000511037 1812 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXA1P49639 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 AC132825.1-201ENST00000463573 2247 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HOXA1P49639 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
HOXA1P49639 RNU1-94P-201ENST00000362627 173 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 RNU5E-10P-201ENST00000363506 118 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
HOXA1P49639 U3.28-201ENST00000391249 210 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
HOXA1P49639 AL034403.1-201ENST00000399414 885 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 RNU2-17P-201ENST00000410290 190 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AL590806.1-201ENST00000415818 853 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXA1P49639 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXA1P49639 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXA1P49639 RPA2P2-201ENST00000419698 796 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 OR2AH1P-201ENST00000425717 928 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.6□□□□□ -1.67
HOXA1P49639 HMGB3P5-201ENST00000428894 612 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 RPSAP32-201ENST00000432681 526 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXA1P49639 AC093716.1-201ENST00000435923 377 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXA1P49639 RPS27P5-201ENST00000444247 244 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC044797.1-201ENST00000445744 679 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AL031584.1-201ENST00000447169 754 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC4.6□□□□□ -1.67
HOXA1P49639 RPL21P47-201ENST00000483696 477 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 DUTP1-201ENST00000493631 470 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC4.6□□□□□ -1.67
HOXA1P49639 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXA1P49639 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXA1P49639 RNU6-276P-201ENST00000516114 96 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 RNU6-1308P-201ENST00000516817 103 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXA1P49639 NPM1P35-201ENST00000533043 868 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 AC009712.1-201ENST00000564938 316 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 RN7SL176P-201ENST00000580352 264 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 BNIP3P38-201ENST00000601117 544 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AL357094.1-201ENST00000603845 844 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 SUMO2P14-201ENST00000604488 293 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC012557.1-201ENST00000607115 611 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 CYCSP41-201ENST00000616920 296 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 RPL23AP61-201ENST00000623642 466 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 AC068787.1-201ENST00000623908 691 ntBASIC4.6□□□□□ -1.67
HOXA1P49639 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXA1P49639 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXA1P49639 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXA1P49639 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXA1P49639 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXA1P49639 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXA1P49639 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 AL121886.1-201ENST00000358609 435 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 AC007618.1-201ENST00000366455 732 ntBASIC4.59□□□□□ -1.67
HOXA1P49639 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXA1P49639 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HOXA1P49639 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms