Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.2□□□□□ -1.42
COL18A1P39060 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL18A1P39060 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.2□□□□□ -1.42
COL18A1P39060 AC090017.1-201ENST00000548612 1779 ntBASIC6.2□□□□□ -1.42
COL18A1P39060 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL18A1P39060 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL18A1P39060 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC6.2□□□□□ -1.42
COL18A1P39060 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.2□□□□□ -1.42
COL18A1P39060 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL18A1P39060 AC008033.1-201ENST00000216407 1162 ntBASIC6.2□□□□□ -1.42
COL18A1P39060 AP001324.1-201ENST00000428553 399 ntBASIC6.2□□□□□ -1.42
COL18A1P39060 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC6.2□□□□□ -1.42
COL18A1P39060 RPL23AP93-201ENST00000440847 484 ntBASIC6.2□□□□□ -1.42
COL18A1P39060 AC114755.5-201ENST00000447760 831 ntBASIC6.2□□□□□ -1.42
COL18A1P39060 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL18A1P39060 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC6.2□□□□□ -1.42
COL18A1P39060 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL18A1P39060 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC6.2□□□□□ -1.42
COL18A1P39060 AC093227.2-201ENST00000589357 285 ntBASIC6.2□□□□□ -1.42
COL18A1P39060 AP001160.4-201ENST00000596971 382 ntBASIC6.2□□□□□ -1.42
COL18A1P39060 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC6.2□□□□□ -1.42
COL18A1P39060 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL18A1P39060 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.2□□□□□ -1.42
COL18A1P39060 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL18A1P39060 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
COL18A1P39060 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC6.19□□□□□ -1.42
COL18A1P39060 ICE2P1-201ENST00000512800 1849 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC6.19□□□□□ -1.42
COL18A1P39060 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.19□□□□□ -1.42
COL18A1P39060 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC6.19□□□□□ -1.42
COL18A1P39060 RN7SL98P-201ENST00000462271 300 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC6.19□□□□□ -1.42
COL18A1P39060 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.19□□□□□ -1.42
COL18A1P39060 NIFKP7-201ENST00000503365 834 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC6.19□□□□□ -1.42
COL18A1P39060 Y_RNA.719-201ENST00000517156 106 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.19□□□□□ -1.42
COL18A1P39060 AC106785.1-201ENST00000565935 262 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC6.19□□□□□ -1.42
COL18A1P39060 AL133243.1-201ENST00000614487 366 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 SNX18P1Y-201ENST00000616231 511 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 DLEU1_1.1-201ENST00000618107 190 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 AL034408.1-201ENST00000637712 664 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL18A1P39060 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.19□□□□□ -1.42
COL18A1P39060 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.19□□□□□ -1.42
COL18A1P39060 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
COL18A1P39060 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL18A1P39060 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL18A1P39060 AL031119.1-201ENST00000404707 1879 ntBASIC6.19□□□□□ -1.42
COL18A1P39060 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL18A1P39060 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL18A1P39060 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 SCP2-206ENST00000430330 938 ntTSL 2 BASIC6.18□□□□□ -1.42
COL18A1P39060 TDGF1P1-201ENST00000445734 527 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.18□□□□□ -1.42
COL18A1P39060 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC6.18□□□□□ -1.42
COL18A1P39060 AC090058.1-201ENST00000498788 435 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC6.18□□□□□ -1.42
COL18A1P39060 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.18□□□□□ -1.42
COL18A1P39060 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC6.18□□□□□ -1.42
COL18A1P39060 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
COL18A1P39060 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 Z95327.3-201ENST00000610385 572 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC6.18□□□□□ -1.42
COL18A1P39060 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC6.18□□□□□ -1.42
COL18A1P39060 DHX9P1-201ENST00000436565 3076 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.18□□□□□ -1.42
COL18A1P39060 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.18□□□□□ -1.42
COL18A1P39060 RPL21P67-201ENST00000402896 478 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 RGS17P1-201ENST00000423358 553 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 TRGV7-201ENST00000427089 353 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 AC020593.1-201ENST00000507399 299 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.18□□□□□ -1.42
COL18A1P39060 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 AL161637.1-201ENST00000622380 412 ntBASIC6.18□□□□□ -1.42
COL18A1P39060 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC6.18□□□□□ -1.42
COL18A1P39060 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.18□□□□□ -1.42
COL18A1P39060 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
COL18A1P39060 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL18A1P39060 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 CR1-203ENST00000367051 7469 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 CR1-204ENST00000367052 7469 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 CR1-205ENST00000367053 7469 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.17□□□□□ -1.42
COL18A1P39060 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL18A1P39060 ATP5F1P2-201ENST00000398143 760 ntBASIC6.17□□□□□ -1.42
COL18A1P39060 AL050305.1-201ENST00000399993 1230 ntBASIC6.17□□□□□ -1.42
COL18A1P39060 AL022722.2-201ENST00000402519 180 ntBASIC6.17□□□□□ -1.42
COL18A1P39060 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms