Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 AC006335.3-201ENST00000613408 292 ntBASIC6.81□□□□□ -1.32
MSX1P28360 pRNA.9-201ENST00000618609 89 ntBASIC6.81□□□□□ -1.32
MSX1P28360 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.81□□□□□ -1.32
MSX1P28360 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.81□□□□□ -1.32
MSX1P28360 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 CEACAM5-203ENST00000405816 2354 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 HSPA8P11-201ENST00000508840 1898 ntBASIC6.81□□□□□ -1.32
MSX1P28360 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 DDX50P1-201ENST00000438163 2400 ntBASIC6.8□□□□□ -1.32
MSX1P28360 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 SF3A3P1-201ENST00000446317 1477 ntBASIC6.8□□□□□ -1.32
MSX1P28360 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 SALL4P7-201ENST00000555779 3120 ntBASIC6.8□□□□□ -1.32
MSX1P28360 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 OR5J1P-201ENST00000313544 939 ntBASIC6.8□□□□□ -1.32
MSX1P28360 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 PPIAP22-201ENST00000358455 498 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RN7SKP63-201ENST00000363187 301 ntBASIC6.8□□□□□ -1.32
MSX1P28360 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 RNU6-43P-201ENST00000384302 107 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RNA5SP35-201ENST00000391257 129 ntBASIC6.8□□□□□ -1.32
MSX1P28360 BCL2L14-204ENST00000396367 1886 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 MIR1303-201ENST00000408625 86 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RN7SKP225-201ENST00000410405 352 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RN7SKP131-201ENST00000410698 301 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RNU6-1068P-201ENST00000410958 103 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RNA5SP498-201ENST00000411342 120 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 MTND3P8-201ENST00000412909 339 ntBASIC6.8□□□□□ -1.32
MSX1P28360 NAP1L1P2-201ENST00000414182 1089 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 MTCYBP8-201ENST00000422855 651 ntBASIC6.8□□□□□ -1.32
MSX1P28360 OR51AB1P-201ENST00000429046 620 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AF274573.1-201ENST00000430535 494 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RPL36AP53-201ENST00000432891 316 ntBASIC6.8□□□□□ -1.32
MSX1P28360 FTH1P20-201ENST00000434913 548 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC005040.1-201ENST00000437783 482 ntBASIC6.8□□□□□ -1.32
MSX1P28360 LSM1P1-201ENST00000438629 273 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 NF1P3-201ENST00000457709 450 ntBASIC6.8□□□□□ -1.32
MSX1P28360 MTCO2P29-201ENST00000465212 189 ntBASIC6.8□□□□□ -1.32
MSX1P28360 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 RN7SL516P-201ENST00000496127 297 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 AC098799.3-201ENST00000506095 438 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC034159.1-201ENST00000513885 583 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC112206.3-201ENST00000514578 389 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC6.8□□□□□ -1.32
MSX1P28360 RNU6-264P-201ENST00000517134 104 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC027309.2-201ENST00000520566 192 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 AC023050.3-201ENST00000541142 333 ntBASIC6.8□□□□□ -1.32
MSX1P28360 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 NANOGNBP2-201ENST00000544753 553 ntBASIC6.8□□□□□ -1.32
MSX1P28360 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 WNK1-220ENST00000574564 1401 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 AC024614.1-201ENST00000577546 307 ntBASIC6.8□□□□□ -1.32
MSX1P28360 PPIAP14-201ENST00000577627 496 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC6.8□□□□□ -1.32
MSX1P28360 TPMTP1-201ENST00000592307 737 ntBASIC6.8□□□□□ -1.32
MSX1P28360 RPS11-203ENST00000596873 583 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 AC022743.1-201ENST00000624990 664 ntBASIC6.8□□□□□ -1.32
MSX1P28360 FKBP1AP4-201ENST00000631775 336 ntBASIC6.8□□□□□ -1.32
MSX1P28360 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms