Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HMGB1P09429 AC124283.4-201ENST00000581815 456 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 AC067852.4-201ENST00000590314 478 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 COX6CP7-201ENST00000597056 208 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 FAM27E4-201ENST00000605259 342 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.82□□□□□ -1.32
HMGB1P09429 AL035661.1-201ENST00000620459 1144 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 AC022400.9-201ENST00000623633 273 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 AC138965.3-201ENST00000623875 498 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 AC092608.3-201ENST00000625017 386 ntBASIC6.82□□□□□ -1.32
HMGB1P09429 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HMGB1P09429 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.82□□□□□ -1.32
HMGB1P09429 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.82□□□□□ -1.32
HMGB1P09429 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.82□□□□□ -1.32
HMGB1P09429 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HMGB1P09429 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.82□□□□□ -1.32
HMGB1P09429 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.82□□□□□ -1.32
HMGB1P09429 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HMGB1P09429 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
HMGB1P09429 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
HMGB1P09429 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
HMGB1P09429 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.82□□□□□ -1.32
HMGB1P09429 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
HMGB1P09429 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.81□□□□□ -1.32
HMGB1P09429 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC6.81□□□□□ -1.32
HMGB1P09429 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.81□□□□□ -1.32
HMGB1P09429 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
HMGB1P09429 RNU1-150P-201ENST00000362491 162 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.81□□□□□ -1.32
HMGB1P09429 MIR1203-201ENST00000408812 85 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 MRPL53P1-201ENST00000414323 319 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.81□□□□□ -1.32
HMGB1P09429 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC6.81□□□□□ -1.32
HMGB1P09429 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.81□□□□□ -1.32
HMGB1P09429 AC246680.2-201ENST00000422106 389 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC6.81□□□□□ -1.32
HMGB1P09429 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC6.81□□□□□ -1.32
HMGB1P09429 RPL7P4-203ENST00000430239 730 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HMGB1P09429 AL158053.1-201ENST00000441503 453 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 HSFY3P-201ENST00000444242 1191 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.81□□□□□ -1.32
HMGB1P09429 RPS7P6-201ENST00000485777 579 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 OR7E157P-201ENST00000494376 911 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 GLUD1P3-202ENST00000508551 200 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.81□□□□□ -1.32
HMGB1P09429 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.81□□□□□ -1.32
HMGB1P09429 AC084824.2-201ENST00000548906 345 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC6.81□□□□□ -1.32
HMGB1P09429 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.81□□□□□ -1.32
HMGB1P09429 AC096996.1-201ENST00000563813 325 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.81□□□□□ -1.32
HMGB1P09429 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.81□□□□□ -1.32
HMGB1P09429 AC020978.7-201ENST00000575953 1187 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC6.81□□□□□ -1.32
HMGB1P09429 AC021851.1-201ENST00000608537 1082 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.81□□□□□ -1.32
HMGB1P09429 AL023881.1-201ENST00000621088 301 ntBASIC6.81□□□□□ -1.32
HMGB1P09429 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.81□□□□□ -1.32
HMGB1P09429 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.81□□□□□ -1.32
HMGB1P09429 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.81□□□□□ -1.32
HMGB1P09429 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
HMGB1P09429 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HMGB1P09429 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
HMGB1P09429 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.81□□□□□ -1.32
HMGB1P09429 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGB1P09429 SAGE2P-201ENST00000420011 2126 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGB1P09429 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGB1P09429 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGB1P09429 NAP1L4P1-201ENST00000319092 1157 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGB1P09429 AL357752.1-201ENST00000412817 349 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 RNF10P1-201ENST00000418589 369 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGB1P09429 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGB1P09429 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC004865.1-201ENST00000442276 1003 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGB1P09429 AC104689.1-201ENST00000473356 768 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 RPS4XP6-201ENST00000477670 797 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGB1P09429 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGB1P09429 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC139365.2-201ENST00000517972 253 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 AC136777.2-201ENST00000522979 358 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC023824.3-201ENST00000569003 562 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC027216.1-201ENST00000577726 685 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGB1P09429 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGB1P09429 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGB1P09429 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGB1P09429 AC079776.5-201ENST00000641920 211 ntBASIC6.8□□□□□ -1.32
HMGB1P09429 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGB1P09429 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms